BAC Information

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BAC

Clone NameMSMg01-452H14
Chromosome12 (Build37)
Map Location 45,076,162 - 45,209,907
singlet/doubletdoublet
Overlap geneLOC100039081
Upstream geneLOC100039059, ENSMUSG00000066507
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452H14.T7 (MSMg01no452_h14.b1)MSMg01-452H14.TJ (MSMg01no452_h14.g1)
ACCAG539717AG539718
length768766
length of high quality
(start - end)		589 (67 - 655)632 (74 - 705)
definitionCHROMAT_FILE: MSMg01no452_h14.b1 PHD_FILE: MSMg01no452_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:02 2005CHROMAT_FILE: MSMg01no452_h14.g1 PHD_FILE: MSMg01no452_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,076,162 - 45,076,750)(45,209,316 - 45,209,907)
sequence
NCCCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GNGAANCNANATTTTTCCCAGTCATCCAACTGTCCCTGGCAAACTAATCT
GCTGAGGTACGGTTTCCCCTAGAACTACAACCTCCAGGAGTTAAGTAGAG
AAGCAAAGTTCACAGTAAGACAGCTATACACAGCATGGGGAGAACTTTTA
AGCCCTACAGCAATCCTGCTAGGCATGTGCCAATGGCTTTTATTCTTTTA
GGACATAGAAAAGAAGAAAAAAACCCTTATATTCCCGCTGTGTTCTACTC
AGAATCATGCTGACTGATCTTGCTGAGAGAGTCTGAAGATGTGACCATTC
CTCCAAACAGAGCAATCTCAGAAGAATGAGCACAAGGCTGATTGAACCAC
TGAAAGGCTGTCAGAAAGACGACATTGCTTTTATTTATTACCAGCTATGT
ACACCTAGCAGGAAGGCAGGAGGGAGTAGCCTTATACAATTAAGTGTGTA
GGGAAATAATGATAACCAAATCAGTTGCAATATCCAAGACAATGAGAAAT
TTTGTGGTCCTAAAGAATGGAATAGGAAAATTTAACTCAACTTTATAAAC
ATCTAAGACAATATGTTGAATAAGGCTTACTGACCCATGGGTAACAGAAT
GCAGAGGCCTGGGAAATTGTCAAATGCATCCCACACTTCTAGCAAAGAAT
GAAGCTAAGTAATGATACCATTACCAGCTTTGGAATTGGAGGAACAAAGC
AGCAAATGGNAAGTAAAA

NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGGCCCATTTTTT
AATGGGGGGGATTCAATTCTTGTTTGGGAAAATAGACTTAAAAACAATAA
GATGAGGTATAACTAAAAGAAAAAAATTGATGTTCTTTAATCAAAAATGT
CCCATATTGTAGACTAGAGACTGTAGACCCCTTAGCTGCTTACTAAGATT
TTTATATCTTGTAAATATAAATTAGAGACAAAACAGATCAGAGCAATCTA
CCTGCAAGGATGGACATACAATGTGATTTGTTCAGGGCTGGCTGTCCTGG
AACTCACTTTGTAAATCAGGATGGTCTTGACCTCATAGAGACCCACCTGC
CTTTGCCTCCTGAGTGCTAGATTAAAGGCTTGCACCACCAAATCAGACAA
CTGCAGGATTACATGATATAACTTTGGCTCACATGTTTATAAGTTATAAT
GGAGAATTTACACATTAACATTTTTTAACAAATTAAAATGTATCATATGC
AATAATTTGCATGGTTTCCCCTTTTGTGTTTTATTAAATAAATAATTAAA
AAAAAGCACCACAAAATCTGAATTTCTAACTTAGTCATTTGTAGTGTGAT
AACAGCCAAAAGGGATGTGTAGCTAGGGCAGTGTTTAATTTTCTCCATTT
TGGCAAAAGCTATGTATATACTTTTGGTCAATATTAGATAGAACAATATC
AGAAATTTAATCAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_h14.b1 MSMg01no452_h14.b1 CHROMAT_FILE:
MSMg01no452_h14.b1 PHD_FILE: MSMg01no452_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:02 2005
         (589 letters)



>mm_chr12_45075962_45076950
          Length = 989

 Score = 1123 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagtcatccaactgtccctggcaaactaatctgctgaggtacggtttcccctagaact 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cccagtcatccaactgtccctggcaaactaatctgctgaggtagggtttcccctagaact 260

                                                                       
Query: 61  acaacctccaggagttaagtagagaagcaaagttcacagtaagacagctatacacagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacctccaggagttaagtagagaagcaaagttcacagtaagacagctatacacagcat 320

                                                                       
Query: 121 ggggagaacttttaagccctacagcaatcctgctaggcatgtgccaatggcttttattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagaacttttaagccctacagcaatcctgctaggcatgtgccaatggcttttattct 380

                                                                       
Query: 181 tttaggacatagaaaagaagaaaaaaacccttatattcccgctgtgttctactcagaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tttaggacatagaaaagaagaaaaaaacccttatattcccgctgtgttctagtcagaatc 440

                                                                       
Query: 241 atgctgactgatcttgctgagagagtctgaagatgtgaccattcctccaaacagagcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctgactgatcttgctgagagagtctgaagatgtgaccattcctccaaacagagcaat 500

                                                                       
Query: 301 ctcagaagaatgagcacaaggctgattgaaccactgaaaggctgtcagaaagacgacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcagaagaatgagcacaaggctgattgaaccactgaaaggctgtcagaaagacgacatt 560

                                                                       
Query: 361 gcttttatttattaccagctatgtacacctagcaggaaggcaggagggagtagccttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttatttattaccagctatgtacacctagcaggaaggcaggagggagtagccttata 620

                                                                       
Query: 421 caattaagtgtgtagggaaataatgataaccaaatcagttgcaatatccaagacaatgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caattaagtgtgtagggaaataatgataaccaaatcagttgcaatatccaagacaatgag 680

                                                                       
Query: 481 aaattttgtggtcctaaagaatggaataggaaaatttaactcaactttataaacatctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattttgtggtcctaaagaatggaataggaaaatttaactcaactttataaacatctaa 740

                                                            
Query: 541 gacaatatgttgaataaggcttactgacccatgggtaacagaatgcaga 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacaatatgttgaataaggcttactgacccatgggtaacagaatgcaga 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_h14.g1 MSMg01no452_h14.g1 CHROMAT_FILE:
MSMg01no452_h14.g1 PHD_FILE: MSMg01no452_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:02 2005
         (632 letters)



>mm_chr12_45208876_45209907
          Length = 1032

 Score = 1137 bits (588), Expect = 0.0
 Identities = 591/592 (99%)
 Strand = Plus / Minus

                                                                        
Query: 41   caattcttgtttgggaaaatagacttaaaaacaataagatgaggtataactaaaagaaaa 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 caattcttgtttgggaaaatagacttaaaaacaataagatgaggtataactaaaagaaaa 973

                                                                        
Query: 101  aaattgatgttctttaatcaaaaatgtcccatattgtagactagagactgtagacccctt 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  aaattgatgttctttaatcaaaaatgtcccatattgtagactagagactgtagacccctt 913

                                                                        
Query: 161  agctgcttactaagatttttatatcttgtaaatataaattagagacaaaacagatcagag 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  agctgcttactaagatttttatatcttgtaaatataaattagagacaaaacagatcagag 853

                                                                        
Query: 221  caatctacctgcaaggatggacatacaatgtgatttgttcagggctggctgtcctggaac 280
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  caatctgcctgcaaggatggacatacaatgtgatttgttcagggctggctgtcctggaac 793

                                                                        
Query: 281  tcactttgtaaatcaggatggtcttgacctcatagagacccacctgcctttgcctcctga 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  tcactttgtaaatcaggatggtcttgacctcatagagacccacctgcctttgcctcctga 733

                                                                        
Query: 341  gtgctagattaaaggcttgcaccaccaaatcagacaactgcaggattacatgatataact 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  gtgctagattaaaggcttgcaccaccaaatcagacaactgcaggattacatgatataact 673

                                                                        
Query: 401  ttggctcacatgtttataagttataatggagaatttacacattaacattttttaacaaat 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  ttggctcacatgtttataagttataatggagaatttacacattaacattttttaacaaat 613

                                                                        
Query: 461  taaaatgtatcatatgcaataatttgcatggtttccccttttgtgttttattaaataaat 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  taaaatgtatcatatgcaataatttgcatggtttccccttttgtgttttattaaataaat 553

                                                                        
Query: 521  aattaaaaaaaagcaccacaaaatctgaatttctaacttagtcatttgtagtgtgataac 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552  aattaaaaaaaagcaccacaaaatctgaatttctaacttagtcatttgtagtgtgataac 493

                                                                
Query: 581  agccaaaagggatgtgtagctagggcagtgtttaattttctccattttggca 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492  agccaaaagggatgtgtagctagggcagtgtttaattttctccattttggca 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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