Query= MSMg01no452_h19.b1 MSMg01no452_h19.b1 CHROMAT_FILE:
MSMg01no452_h19.b1 PHD_FILE: MSMg01no452_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:03 2005
(404 letters)
>mm_chr12_72849471_72850274
Length = 804
Score = 656 bits (339), Expect = 0.0
Identities = 379/393 (96%), Gaps = 2/393 (0%)
Strand = Plus / Minus
Query: 8 ggaattccttagattcgattatttggtttagctcctttctaggtatgaagatgcccctct 67
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggaattccttagaagggattatttggtttagctcctttctaggtatgaagatgcccctct 496
Query: 68 cccaccatctggttagagtaatctgttgcagcctgagttagtcacacctctccctccagt 127
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 495 cccaccatctggttatagtaatctgttgcagcctgagttagtcacacttctccctccagt 436
Query: 128 tcttggcaggctgtcaaccgcaaataggaacacgaaaccaaaataacagctttactactg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcttggcaggctgtcaaccgcaaataggaacacgaaaccaaaataacagctttactactg 376
Query: 188 atggagcagggcttgaggctgcaggcttggagcagagctggaaaacaccggcggtgcctg 247
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 375 atggagcagggcttgaggctgcaggcttggagcagagctggaaagcaccagcggtgcctg 316
Query: 248 agcccttgtgctcagagctgcgttgaccagtctcatcttagcaaagtaggtgggtgtgag 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccttgtgctcagagctgcgttgaccagtctcatcttagcaaagtaggtgggtgtgag 256
Query: 308 cactggccttttcctacaggacaagcctttacccagaaggctgacagggagagagaggag 367
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 cactggccttttcctacaggacaagcctttacccagaaggctgacagg--gagagaggag 198
Query: 368 atgagagagggagagggagagggagagggagag 400
| ||||||| ||||| ||||| ||||| |||||
Sbjct: 197 acgagagagagagagagagagagagagagagag 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_h19.g1 MSMg01no452_h19.g1 CHROMAT_FILE:
MSMg01no452_h19.g1 PHD_FILE: MSMg01no452_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:03 2005
(552 letters)
>mm_chr12_72671501_72672452
Length = 952
Score = 1036 bits (536), Expect = 0.0
Identities = 548/552 (99%)
Strand = Plus / Plus
Query: 1 tcattcacttctcaaagaacaatcacttaattctttgcctaaaactctgatggcacaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattcacttctcaaagaacaatcacttaattctttgcctaaaactctgatggcacaatt 260
Query: 61 gtaccagcgaagaggggttctctctcattggcttttctgcaagcattggccaggggtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaccagcgaagaggggttctctctcattggcttttctgcaagcattggccaggggtctg 320
Query: 121 aggctcatgggccatccagctgtttcagctggtcatttcttcagtagcagaaatatcctc 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctcatgggccatccagctgttccagctggtcatttcttcagtagcagaaatatcctc 380
Query: 181 aatagactcaatcaactctgttgattgtctttctattcctctgttcagccctggcttggg 240
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagactctgtcgactctgttgattgtctttctattcctctgttcagccctggcttggg 440
Query: 241 tgggttttctctgctggaaggcttggtggtgcacagaaaagtctcagagactgaggtagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggttttctctgctggaaggcttggtggtgcacagaaaagtctcagagactgaggtagt 500
Query: 301 ggaaagagccaggcacctaagggaaaatcctgacacacatatgaaggctatttcttttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaagagccaggcacctaagggaaaatcctgacacacatatgaaggctatttcttttct 560
Query: 361 agctcatgttgtatatctaatgtttactgacaggctaattctctactcttactttatctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctcatgttgtatatctaatgtttactgacaggctaattctctactcttactttatctc 620
Query: 421 tgccttgcctggagcaggctactgcgtgtatgaaaacatttcatttctgttattttactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccttgcctggagcaggctactgcgtgtatgaaaacatttcatttctgttattttactt 680
Query: 481 cgttcgttccatatttgttcttagagtcttcacctctccttgctaggcctgtcatcatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgttcgttccatatttgttcttagagtcttcacctctccttgctaggcctgtcatcatgt 740
Query: 541 atccttgactgc 552
||||||||||||
Sbjct: 741 atccttgactgc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
