Query= MSMg01no452_p10.b1 MSMg01no452_p10.b1 CHROMAT_FILE:
MSMg01no452_p10.b1 PHD_FILE: MSMg01no452_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:41 2005
(618 letters)
>mm_chr12_112337051_112338068
Length = 1018
Score = 1060 bits (548), Expect = 0.0
Identities = 603/634 (95%), Gaps = 20/634 (3%)
Strand = Plus / Plus
Query: 5 gaattcaaattttataacccacattaatggttcaggcatttcgtacacataactggagtt 64
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 185 gaattcaaatcctagaacccacattaatggttcaggcatttcgaacacataactggagtt 244
Query: 65 ccagtggtggggataggtgtggtggagatggacttgccgggcctgccagctttcaggctg 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccagtggtggggataggtgtgatggagatggacttgccgggcctgccagctttcaggctg 304
Query: 125 gcaaacaaacaaacaaaaacacaagaggtggtatttgagggcagaggcagatggatctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 gcaaacaaacaaacaaaaacacaagaggtggtatttgagggcagaggcagacggatctct 364
Query: 185 gcgttcaaggccagcctgatctatactttgagttctagggcagccagggctatacaaatt 244
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 365 gcgttcaaggccagcctgatctacattttgagttctagggcagccagggctatacaaatt 424
Query: 245 tttaaaaattaaaaagaaaatatattactttttaaaaatgcataaaaagttaatcatttt 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttaaaaattaaaaagaaaatgtattactttttaaaaatgcataaaaagttaatcatttt 484
Query: 305 tgtagttaaaactcatgaatttttcaattttggtggttgataaagtgcataagatattca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtagttaaaactcatgaatttttcaattttggtggttgataaagtgcataagatattca 544
Query: 365 atatttgtgaaagtataaaatgca--------------------gctttgatactgaatg 404
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 545 atatttgtgaaagtataaaatgcaatgtgaaagtataaaatgcagctttgatactgaatg 604
Query: 405 gcctctgtaactgcatagaagttcactgaggtgtatggtctttgagtctggttaattttg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcctctgtaactgcatagaagttcactgaggtgtatggtctttgagtctggttaattttg 664
Query: 465 gtgtgtgaattttttttttggcccaacttttttataataaagttaaagataattttttaa 524
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gtgtgtgaaatttttttttggcccaacttttttataataaagttaaagataattttttaa 724
Query: 525 aaagaaaagtgcggggctggagagatggctaattggctaagagcactgactgctcttcca 584
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 725 aaagaaaagtgcggggctggagagatggctaattggctaagaacactgactgctcttcca 784
Query: 585 aagtcctgagttcaaatcccagcaaccacatggt 618
||||||||||||||||||||||||||||||||||
Sbjct: 785 aagtcctgagttcaaatcccagcaaccacatggt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p10.g1 MSMg01no452_p10.g1 CHROMAT_FILE:
MSMg01no452_p10.g1 PHD_FILE: MSMg01no452_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:41 2005
(506 letters)
>mm_chr12_112523626_112524531
Length = 906
Score = 901 bits (466), Expect = 0.0
Identities = 501/524 (95%), Gaps = 18/524 (3%)
Strand = Plus / Minus
Query: 1 gagtgctttttccttagcctggacacaccacagcaactggaaaccagaaacaggagtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gagtgctttttccttagcctggacacaccacagcaactggaaaccagaaacaggagtggg 544
Query: 61 tgtgggccagcaccccaagcaggcagcgcagagggaccgaagattcctcctcaattagag 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 543 tgtgggccagcaccccaagcaggcagcgcagagggaatgaagattcctcctcaattagag 484
Query: 121 aaagccgagcttggatagtgggcagaaagagctgctgtccagacccagcggggccgggcc 180
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 483 aaagccgagcttggatagcgggcagaaagagctgctatccagacccagcggggccgggcc 424
Query: 181 tctagctgcccaccctggcaggcagagcgtcctttgcctcccggtgttactgacagcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctagctgcccaccctggcaggcagagcgtcctttgcctcccggtgttactgacagcagc 364
Query: 241 ttcctggccctgggcccttgggaattcacaggagcctcccaggccatcttagagcaacag 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 363 ttcctggccctgggcccttgggaattcacacgagcctcccaggccatcttagagcaacag 304
Query: 301 gctgggaaagccctcaaccccgtttggagaccagcacgatattttctctgcggactggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gctgggaaagccctcaaccccgtttggagaccagcacgatattttctctgcggactggct 244
Query: 361 tgcagtgctgagaatggagcctgaacttcccgtgtgctgag------------------g 402
||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 243 tgcagtgctgagaatggagcctgaacttcccgtgtgctgaggcaagcctactacctactg 184
Query: 403 ccgagcccacgcgcagccccacatgcagccccacagccaagcgtttctgccatattcttc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccgagcccacgcgcagccccacatgcagccccacagccaagcgtttctgccatattcttc 124
Query: 463 cccagagtccagtgtcctctgcaaggcccgaagaacacacacac 506
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cccagagtccagtgtcctctgcaaggcccgaagaacacacacac 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
