BAC Information

Click to search

BAC

Clone NameMSMg01-457A02
Chromosome12 (Build37)
Map Location 96,117,381 - 96,117,769
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457A02.T7 (MSMg01no457_a02.b1)MSMg01-457A02.TJ (MSMg01no457_a02.g1)
ACCAG543174AG543175
length724798
length of high quality
(start - end)
562 (52 - 613)389 (83 - 471)
definitionCHROMAT_FILE: MSMg01no457_a02.b1 PHD_FILE: MSMg01no457_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:01 2005CHROMAT_FILE: MSMg01no457_a02.g1 PHD_FILE: MSMg01no457_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTGATAATCATAGGTTCTATTTTGTCTAGCCTATGAAT
CAACATCCCTTGACTCTAGCCCCTTGATTATCACAAGAAGACAGCAAGCA
TTTTTTTCTTCTTCTTATATTGCAAAGGAATTCAGAGATCTGCCTGCCTT
TATTAAGTACAGACAATAAGCTAGCTGGGTGGGACCCCCACCCTAAAATT
ACCATTCCTACCACACCTGGGCCAAGAACTAAACTTCTGCTGGACCTGGA
AGACCTTAAACTCAGGAATTTGCCTGCCTTTATGAGCAAAAACAAAACAA
AAGTTGCCCTTCAATCACCACTCCCTCAAGCTATCTTCTTTCTTAGTAAC
ATTCTGACAATTTGACTCGCAGTGCAGCTGCCTCTGTTCTTTTAAATCTG
TGAAGCTTCTTACACAATTCACAAGCATCCTCATATTTTTGAAGAATTGG
TAAAGTATATATGTTTGAACTTATATTTTTAGTGTTTATTCCCACAACAT
TAAGGGCTGTCCTGAAGGTCTCAGCATTTGCCATTTTGCTAAGATATAGA
CATACCCTTGCCTCCTGGACTCCTGTTGCTTCTAATTATGATGGAATCTT
TAAAATTAGTTTGAAATTAGTTTGGTCAGACTCACAGGGTTGTAGTTTCT
CTTATTCTAGCATATACGGATTTC
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCATAAAGCCCAACATG
TGGCTAGTGTCTACCTTTTTGGAAATTTGAGCTCTAAAGTAGGAATTTCA
GTTTTTATACCGGCAGTATCACTAAAGTGATAACTTAAGCTTTAGAATCG
ACATGGAGGGCAAAGGAGACTTAATCTTTCTGTCAGATTTGGCCTTCTCT
ATACCAAGGATTAATTGATGCATTTTGAAATAAGGAATGACAAGTTTCCC
TTTTATGTGTAGATTTAGAGTGAAGAACTTAACTGCCTAGGGAGGGTGTT
GAGTTTTCTTACTGTGACAAATTAATAACATGTTTTGAAGATGATTTAAA
GGAGTAGGATTGACAGGCACTGCTTGAGCTTGAGGGGAAAAATCATATAA
CTCTGCCCATTATTTTGGAATGTATGATGGCGAGTATTTTGGACTCTTTT
TTCGTTTTTGTTTTTTCATTTCATTTCTTGTATCCCATCTTTTTTTTAAC
ACTCACTCCTTTTTTTACTTCTCCTTTTACCTTTTTTTACCTTTACCTTT
TTTCACTTCTTTTCTCGCTACGTTTCCATTCGCTTTCTCTCCTTTTTCCC
TCTCTTTTTTTTCTTTCGTCCTTTTCTCCTCCTTCTTTTTTTTTTTTTCC
TTTTTATCCCTTTCTATTTTTTCCTCTTTTTGTCTTCTCTCTCCATTAAT
CTGATCCATTTTTCACTTCTACGCCACCTTCTTGCCTTCTCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_a02.g1 MSMg01no457_a02.g1 CHROMAT_FILE:
MSMg01no457_a02.g1 PHD_FILE: MSMg01no457_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:02 2005
         (389 letters)



>mm_chr12_96117181_96117969
          Length = 789

 Score =  690 bits (357), Expect = 0.0
 Identities = 381/389 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcataaagcccaacatgtggctagtgtctacctttttggaaatttgagctctaaagtag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 589 tgcataaagcccaacatgtggctagtgtctacctttttggaaatttgaactctaaagtag 530

                                                                       
Query: 61  gaatttcagtttttataccggcagtatcactaaagtgataacttaagctttagaatcgac 120
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct: 529 gaatttcaatttttatacaggcagtatcactaaagtgataacttaagctttagcatagac 470

                                                                       
Query: 121 atggagggcaaaggagacttaatctttctgtcagatttggccttctctataccaaggatt 180
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 atggagggcaaaggagagttaatctttctgtcagagttggccttctctataccaaggatt 410

                                                                       
Query: 181 aattgatgcattttgaaataaggaatgacaagtttcccttttatgtgtagatttagagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aattgatgcattttgaaataaggaatgacaagtttcccttttatgtgtagatttagagtg 350

                                                                       
Query: 241 aagaacttaactgcctagggagggtgttgagttttcttactgtgacaaattaataacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagaacttaactgcctagggagggtgttgagttttcttactgtgacaaattaataacatg 290

                                                                       
Query: 301 ttttgaagatgatttaaaggagtaggattgacaggcactgcttgagcttgaggggaaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 289 ttttgaagatgatttaaaggagtaggattgacaggcactgcttgagtttgaggggaaaaa 230

                                        
Query: 361 tcatataactctgcccattattttggaat 389
           |||||||||||||||||||||||||||||
Sbjct: 229 tcatataactctgcccattattttggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)