BAC Information

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BAC

Clone NameMSMg01-457K08
Chromosome12 (Build37)
Map Location 30,226,807 - 30,226,984
singlet/doubletsinglet
Overlap geneMyt1l, LOC100043496
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream genePxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K08.T7 (MSMg01no457_k08.b1)MSMg01-457K08.TJ (MSMg01no457_k08.g1)
ACCAG543663AG543664
length807820
length of high quality
(start - end)
241 (77 - 317)178 (80 - 257)
definitionCHROMAT_FILE: MSMg01no457_k08.b1 PHD_FILE: MSMg01no457_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005CHROMAT_FILE: MSMg01no457_k08.g1 PHD_FILE: MSMg01no457_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAACCGCG
GAATTCCTTCCTGGTGCAGACAAAACAGCCCTTAGTTTTAAGCCAACATG
CCAGTCCACCAAAGTTTTTCCTAGGCAACTGTCCCAGTTTCCTTTCTATT
GCTGATGAACACCTTGACCAAAAGCAACATGGAAGGATAGGGTTTATGTC
ATCTTACACTTTATCGTCTGTAATAAGTGGAAGCCAAGACAGGAACTTGA
CATTATGAACTAAAACAGAAGCCATGAAGGACTGATACTTACTGGCTTAC
TCTCTGTGGCTTATCCTCCTCGTCNTCTTATACAACCCAGGACTACCTGC
CTCGGGTTTTTTCCATCCATAGTGGCCTGGCCCCTGACACATCAACTAAC
AATCATGGAAATGCCTCACCGACTCTTCGTATGCCAATCTGTTGAAAGCG
TTTTTCTCCATTGAGGTTTCCTTCCCAGATGATCCTCGCTGTGTCTATGT
TGACAATAATTATCCTGCACACAGGTTTAACTGATTTTTTTTGGGTTTCA
TTCTCTCAACTTTGCTGTTTTTTGCTCTTTCTTTCATTTATATACCCTGT
TTTGGCAAGTTTTCTTTTCCCTCTTTCTTGTTTTCACTTTCTCACTACTT
TCTTTCTCTTCCATCTCCTTTTTATTTTTATTTTCTTTCCTATCAAACTG
ATACTTCTCTCTCGTACTCCTTACTTTTTTTCCCTTTACTCTTTTTTCTT
ACACCCTTCTTCACCACTTTTATTTCTATCTCATTCTTCCTTTTTTACTC
CTTTTTT
TTTCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCAGAAATATCTTTGGTCCTTATGGAGAGTC
AGAGCATCACCCGGGCCTGGTTTGGTTTAATCAGCTGGACTACGTACGTG
TGCACTGTAAGTTTCCAGCTAATTCTTAAGGAATCAGAAATGACTGGTTG
TCTTGATTATTTTCCTATGAGCTTCTACCAAAAGGCATTTTCACCAAAGA
GCAAACAGGTTTTCATCCTTTCTAGATGTATTTGGTTCCATGTCCCTTTT
ATCTTTAAAGTGAAATTTCCATTTGTAGNCTCANTTTGGCACGACCTGGA
ACCCATTTGGAAGGTGTTTGTCTGCAACGCAGCGTGCTATAGTCTGGTTT
CCCACAAGACTTGTGGGTGACTTCCACCTTTTTACTTCTTTGTATACTGT
CCTCATAGTAAGTAACGTATCTCCTTTTTTTTTCTTATCTCCTTTTTATT
CTTTCCCTGTTTTATACTATCTTTATTATTCCCGCTCTTCTTTTCTTCAT
GATACTCTTTGTCTTCGACTCCTCCTTTTTTTTTCTTCATTTTTTGCTTT
TTTATACGTTTCTCTTTTTCTCCATTTTCGTCTCTCTCTATCCCTTACCT
TTACTTATTATTTTCCCGCTCTCTTTTCCTCTGTTCCTCTCCACATATTT
TTTTTTTTTTTTTTCCCTTTTTTTCCCTCCTCACCTCTTCTCCACTTTAT
TTTATCTCTCTATTTTTATTTTATTCACTTTCTCCATTCATTCTCCCTCT
CTTTCTTTCTCTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k08.g1 MSMg01no457_k08.g1 CHROMAT_FILE:
MSMg01no457_k08.g1 PHD_FILE: MSMg01no457_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:56 2005
         (178 letters)



>mm_chr12_30226607_30227184
          Length = 578

 Score =  344 bits (178), Expect = 2e-99
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttggtccttatggagagtcagagcatcacccgggcctggtttggtttaatcagctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttggtccttatggagagtcagagcatcacccgggcctggtttggtttaatcagctgga 260

                                                                       
Query: 61  ctacgtacgtgtgcactgtaagtttccagctaattcttaaggaatcagaaatgactggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacgtacgtgtgcactgtaagtttccagctaattcttaaggaatcagaaatgactggtt 320

                                                                     
Query: 121 gtcttgattattttcctatgagcttctaccaaaaggcattttcaccaaagagcaaaca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcttgattattttcctatgagcttctaccaaaaggcattttcaccaaagagcaaaca 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)