BAC Information

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BAC

Clone NameMSMg01-458F14
Chromosome12 (Build37)
Map Location 34,120,570 - 34,274,076
singlet/doubletdoublet
Overlap geneTwistnb, LOC668801
Upstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458F14.T7 (MSMg01no458_f14.b1)MSMg01-458F14.TJ (MSMg01no458_f14.g1)
ACCAG544200AG544201
length751756
length of high quality
(start - end)		517 (76 - 592)545 (81 - 625)
definitionCHROMAT_FILE: MSMg01no458_f14.b1 PHD_FILE: MSMg01no458_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:55 2005CHROMAT_FILE: MSMg01no458_f14.g1 PHD_FILE: MSMg01no458_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,120,570 - 34,121,086)(34,273,585 - 34,274,076)
sequence
TTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGCG
CGGAATTCTGTTCATTCTCTGTCGACATTTCTTCCACTTGACCTAATCTG
ATAAGGGGTTTAACTGAAGTTTTTAAAACTAATTACTGTATTTGAGAGCT
TTATATACTTTAGTTTGATTATATTCACTCCATTCCCGTAATCTTCCCAG
CTCCTCCCTCTCCCACCTGACTCATGTTATCTCTTTTTTAAGTCCAGTTT
GTTTTGGCTGACCCCTGGACATGGGGCCCTACTGCCAGTGTCCTTGGTAT
GCCAGGTATCGCACCATTAAGTAGTTCTGAATTTCCCTCTCCACTAGCAA
TTAAATGCCAACAGCTCCTCAGCTGGGGTGAGGACTTTGTGTCTCTCCAT
GCTGGGATTTTGTTTGGCTTGGGTTTGTGTAGGTCTTGTCCATGCTTTTG
TGCAGTAAGCCTTTTCTTGAGGAGCTGGTTTCTCACTCCAGATAGGAACC
CCATGACAGACCAATACCACTAAAGCCTAACTTTGTAAACCAGTGAGTAT
TACTAGGGTTATTTACAGGAACACTACAAGTTTTTGTCTGGCTCTAGGCA
GATTCATTGTAGATGGATCAGCCCCAGGCTATTAAGTTCTAAATGAGGTC
ATTAGAGCCTACTAGCTATCTTACACCTGAAGTCCTGGGAGGAATTTTTA
TAGGACCTGCTGTGGGGGGTAGAAGATAATAAATTTGTCCAATCCCCCCC
N

NCCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAACCAGCCTAGGCTACGTAGCAA
GAGCAACATAATTAAGGATGTGCCAGGTATGCATTTAAAGAACCAAATAC
ATAAATATACATAGGGTCCTGTAACAAAGAAGACTTAATGTTCTCAACAG
GGAAGCCAACAACAGACAAAAACTAAAATCCCAAATGACCTTTAATGTGA
ATGTCTATTTCACATAACGAGATGTGTAGCCAGCAACGTTCCACTGGAGA
GGTTGGAAGTCAAAGCATTCTATTATATTATCAACTTTGTGAATACGAAG
AAAGAACTCCACTGAGCATACCACAATGGCATAGAAACTTAAGATTGTCA
TCAGACTTCTAACGTACCAAGAGGAAATGCTTCAGACAGAGGAAAGAAAA
ATGAAGCACGAAAGTGAGTGACCCGCACAGGTCTCGCTCAAGCATGAAGA
CTATAAACTAATTTTTGTGAATGCAGAAGAATTCAGAAATTATTGCTCCC
ATGAGTGTTTCCTGAAAATTCCAATGAATGGACTTCAAACAACAAAACGT
TTGCTGCCACATCAAAATACAGATGTGGTGAGTGTTGAGGGTCCCTCTTA
CAGATCAGTGCTATATTAGGCCTAAGGAAAGNAGTAATTGCTATGGCCGC
TTTTACCCCCGAGAGAAACTAATAGAATTATGATTAGAACGAATGGAACA
AAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_f14.b1 MSMg01no458_f14.b1 CHROMAT_FILE:
MSMg01no458_f14.b1 PHD_FILE: MSMg01no458_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:55 2005
         (517 letters)



>mm_chr12_34120370_34121286
          Length = 917

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcttccacttgacctaatctgataaggggtttaactgaagtttttaaaactaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcttccacttgacctaatctgataaggggtttaactgaagtttttaaaactaatta 260

                                                                       
Query: 61  ctgtatttgagagctttatatactttagtttgattatattcactccattcccgtaatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtatttgagagctttatatactttagtttgattatattcactccattcccgtaatctt 320

                                                                       
Query: 121 cccagctcctccctctcccacctgactcatgttatctcttttttaagtccagtttgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagctcctccctctcccacctgactcatgttatctcttttttaagtccagtttgtttt 380

                                                                       
Query: 181 ggctgacccctggacatggggccctactgccagtgtccttggtatgccaggtatcgcacc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ggctgacccctggacatggggccctactgcgagtgtccttggtatgccaggtatcgcacc 440

                                                                       
Query: 241 attaagtagttctgaatttccctctccactagcaattaaatgccaacagctcctcagctg 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaagtagaactgaatttccctctccactagcaattaaatgccaacagctcctcagctg 500

                                                                       
Query: 301 gggtgaggactttgtgtctctccatgctgggattttgtttggcttgggtttgtgtaggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtgaggactttgtgtctctccatgctgggattttgtttggcttgggtttgtgtaggtc 560

                                                                       
Query: 361 ttgtccatgcttttgtgcagtaagccttttcttgaggagctggtttctcactccagatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtccatgcttttgtgcagtaagccttttcttgaggagctggtttctcactccagatag 620

                                                                       
Query: 421 gaaccccatgacagaccaataccactaaagcctaactttgtaaaccagtgagtattacta 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaccccatgacagaccaatatcactaaagcctaactttgtaaaccagtgagtattacta 680

                                                
Query: 481 gggttatttacaggaacactacaagtttttgtctggc 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggttatttacaggaacactacaagtttttgtctggc 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no458_f14.g1 MSMg01no458_f14.g1 CHROMAT_FILE:
MSMg01no458_f14.g1 PHD_FILE: MSMg01no458_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:55 2005
         (545 letters)



>mm_chr12_34273585_34274529
          Length = 945

 Score =  897 bits (464), Expect = 0.0
 Identities = 485/492 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcctaggctacgtagcaagagcaacataattaaggatgtgccaggtatgcatttaaag 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 492 cagcctaggctacgtagcaagagcaacataattaaggatgtgggaggtatgcatttaaag 433

                                                                       
Query: 61  aaccaaatacataaatatacatagggtcctgtaacaaagaagacttaatgttctcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaccaaatacataaatatacatagggtcctgtaacaaagaagacttaatgttctcaacag 373

                                                                       
Query: 121 ggaagccaacaacagacaaaaactaaaatcccaaatgacctttaatgtgaatgtctattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggaagccaacaacagacaaaaactaaaatcccaaatgacctttaatgtgaatgtctattt 313

                                                                       
Query: 181 cacataacgagatgtgtagccagcaacgttccactggagaggttggaagtcaaagcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacataacgagatgtgtagccagcaacgttccactggagaggttggaagtcaaagcattc 253

                                                                       
Query: 241 tattatattatcaactttgtgaatacgaagaaagaactccactgagcataccacaatggc 300
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tagtaaattatcaactttgtgaatacgaagaaagaactccactgagcataccacaatggc 193

                                                                       
Query: 301 atagaaacttaagattgtcatcagacttctaacgtaccaagaggaaatgcttcagacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 192 atagaaacttaagattgtcatcagacttctaacgtaccaagaggaaatgcttcagaccga 133

                                                                       
Query: 361 ggaaagaaaaatgaagcacgaaagtgagtgacccgcacaggtctcgctcaagcatgaaga 420
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 132 ggaaagaaaaatgaagcacgagagtgagtgacccacacaggtctcgctcaagcatgaaga 73

                                                                       
Query: 421 ctataaactaatttttgtgaatgcagaagaattcagaaattattgctcccatgagtgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ctataaactaatttttgtgaatgcagaagaattcagaaattattgctcccatgagtgttt 13

                       
Query: 481 cctgaaaattcc 492
           ||||||||||||
Sbjct: 12  cctgaaaattcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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