BAC Information

Click to search

BAC

Clone NameMSMg01-459E08
Chromosome12 (Build37)
Map Location 25,441,196 - 25,441,574
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2
Downstream geneLOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459E08.T7 (MSMg01no459_e08.b1)MSMg01-459E08.TJ (MSMg01no459_e08.g1)
ACCAG544905AG544906
length765774
length of high quality
(start - end)
452 (63 - 514)379 (73 - 451)
definitionCHROMAT_FILE: MSMg01no459_e08.b1 PHD_FILE: MSMg01no459_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:08 2005CHROMAT_FILE: MSMg01no459_e08.g1 PHD_FILE: MSMg01no459_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACTTACTTTTTGGACAGGAGGGCTGCTTAGTTTTAACTTTCAAC
TTGACACAACCTACACTCACCTGGGAAGAGAGTCTTAATGAAGAATTTTG
TAGATCGGCATGGCCTGTGAGGGGTCAATTTGACTGTTTATGTAGGAAGA
CGTAGCCCACCGTAGGGAGCACTGTTCCCTAGGAAGGGAATCCTGGACGA
AGCAAGTCAGAAGGAAGCTAGCTGAGAGAAGGGCTCTGCCTTTATTTATG
TCTCCCTGCTGTTTATGGTGGAATGATAGCTGCTTTTAGTTCCTGCTGCT
GTGACTACTATGATGATCTGTGTCCTGGTTGGTTTTTCTTTTGTCCATGT
GACACAAGCTAGAGTTATCTGAGATGAGGGAACTACAGTTGAAAGCATTC
TTCCATAAGACTGATCTGTTGGCAATCCAATGGGACATTTTCTTAGTTAG
GGATTGATATGGGAGGGACCAGCCTCTCGTGGTCAGTGTTATCCCTATGC
ACGTAGCCCCTGTACTAATTAGCCTGGCTGGACTAATTGGTAGGAATCGG
AGGGTAATCCGCTCTCCTCCGCCACTTCCCCATTATTCTCCGGCCTCCGT
AATCGCCCTTGGTCTCCTGTCTAATTTCCCCTTTCGTATTATTGGGTGCC
CCCCTCCTTTTTATTCTCTTACTCCTTTTCCCCCATTATCTCCTTTCCCC
CTTATGTTCCCTCCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACT
CAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCG
CCACCACGCCCGGCTTTCAGTCATTCATTTGACACACGTTTGCTCACTGG
TTCAGGACCACCAAGCATCTATGCAGAAGAACATCACTATCCCAGATGCT
GATCTCACTGGGCGCTCAGTGAGACACCCCCCACTCCCAAGGAAGCCCAG
GCCAGTGTGGCTCAAAGTTCAATCCTCCGGAAAGCCCAAGGAGGCCTGGC
TTCACCCATCAGTCCATGAGGTGATTGTGCTGGACACAGAGTGCCAAGTA
GGGGCTGGAGTCAGACCTGGAGCCTTGGGCTACACTCAGGACCAGCAGTA
AGGGATGAAGTCTGAGGACCTGGGGATGGACACCCAGTCAGGAGATGCAC
GGTATTGGCGGCTCCCCGCTGTGCATGTCTGTGTGGTTGTCTCATCTGTT
TCTCTTTACATTCTGTGCATCCCTTTTTTCCCCGTTAGGTTGTTACTCCC
CTCTTTCTTCCTCCCGTCCCCCCCCCCTTTTTCTTTCTTCCCGCTTCCAT
TTAACTCTCTTTTTTTTTCTTCCCTTCCTCTCCTCCCAACTTGCTGTCTT
TTTTTTCTTCTCATTTCTTTCGCTTCCCGCCCTCTCTCTTTTTTCCTGCC
CTCTCCTTTTTTTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_e08.g1 MSMg01no459_e08.g1 CHROMAT_FILE:
MSMg01no459_e08.g1 PHD_FILE: MSMg01no459_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:08 2005
         (379 letters)



>mm_chr12_25440996_25441774
          Length = 779

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgc 260

                                                                       
Query: 61  tgggattaaaggcgtgcgccaccacgcccggctttcagtcattcatttgacacacgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcgtgcgccaccacgcccggctttcagtcattcatttgacacacgtttg 320

                                                                       
Query: 121 ctcactggttcaggaccaccaagcatctatgcagaagaacatcactatcccagatgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcactggttcaggaccaccaagcatctatgcagaagaacatcactatcccagatgctga 380

                                                                       
Query: 181 tctcactgggcgctcagtgagacaccccccactcccaaggaagcccaggccagtgtggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcactgggcgctcagtgagacaccccccactcccaaggaagcccaggccagtgtggct 440

                                                                       
Query: 241 caaagttcaatcctccggaaagcccaaggaggcctggcttcacccatcagtccatgaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagttcaatcctccggaaagcccaaggaggcctggcttcacccatcagtccatgaggt 500

                                                                       
Query: 301 gattgtgctggacacagagtgccaagtaggggctggagtcagacctggagccttgggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattgtgctggacacagagtgccaagtaggggctggagtcagacctggagccttgggcta 560

                              
Query: 361 cactcaggaccagcagtaa 379
           |||||||||||||||||||
Sbjct: 561 cactcaggaccagcagtaa 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)