BAC Information

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BAC

Clone NameMSMg01-459H24
Chromosome12 (Build37)
Map Location 5,481,388 - 5,481,720
singlet/doubletsinglet
Overlap genenone
Upstream geneNcoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459H24.T7 (MSMg01no459_h24.b1)MSMg01-459H24.TJ (MSMg01no459_h24.g1)
ACCAG545078AG545079
length786819
length of high quality
(start - end)
438 (43 - 480)337 (70 - 406)
definitionCHROMAT_FILE: MSMg01no459_h24.b1 PHD_FILE: MSMg01no459_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:26 2005CHROMAT_FILE: MSMg01no459_h24.g1 PHD_FILE: MSMg01no459_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCATACCTATTCAATATAGTACT
TGAAATCTAGCCAGAGCAATCGACAACAAAAGGAGATCAAGGGGATACAA
ATTAGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATAAGATAGT
ATATATAAGTGACCCTAAAAATTCCATCAGAGTACTGTTAAACCTGATAA
ACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATG
GCCTTTCTCTACACAAAGGATAAACAGGCTAAGAAAGAAATTAGGGAAAC
AACACCCTTCACAATAGTCACAAATAATATAAAATACCTTGGTGTGACTC
TAACTAAGGAAGTGAAAGATCTGTATGATGGATTTTTTTTTTAAGAGAGA
AAAAATAAACACCAATTCCACTGGGAAGAGGNGGAAGGCTAAAACCTGGA
AAAAGGTAAAAAATGGGGAAAAAACCCCCCCATTGGAAATTTCCACCTCA
ACATATAAAAGGGAAGGCCTCCCTCCTTTAGAACACTTTTTCGAGAAGGT
GGCCCTCCAGGGAAAATAAAAAAAAAAAACTTGGTGGGTTCCGCCCTTGG
CCAAAAGGAGCGATGGGTAAAAAAAAATAAACCTTC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCGTCATGCCCCTGTAGTATTCCAGCGTAT
GGAAAGCCCCACTGCCGTGTATCCATTTCGTCCTCAGAGATCACTGATGT
GGTTGGCGGGATGCACTGAAGATCACTACCTTTTCTCCTCATGCTAGTTA
ACATGGGAGCCTTGGTTTCTCACTTGCAGAATGGGGTACTTACATTTATC
TCACAGGGTGAACTCAGGAGCCAGTGTATATAAAGCCACTGTTACAGTTC
TTGGTACAATAGACGTTCAGTAATGGAAACCATGGCCGCCAAAGGGGTAA
GGTTCTTGGGATGTTGCCTGGGTCTGCTGAGGCTGGTGGAAGCTCCAGGA
TGCTACGTCTTGCGTCTAGTCGCACTGTTGCATGGACTCCGGGCTATATC
CAGGATGTGTGGTAAATATTCAGTGGCACCTATACTTTCTCTTGTCCTCC
TTCTTTTTTCCACTCCCCCTACCTTTCATATCTTTCTTTCTTTCCTTTTT
TGTCCCCTCCCCTCTTCTTTCTTTTCCAGTTTCATGTTATCCCTTCTCCC
CTTTTTACCCCCCTTTTTTTCATTCTCCCCTCCTTCCTCTTCTCCTCCTT
TTTCTTTTCATTACTATCCCCCCCCCCCACCTTTTCTTTCCCTCTCTTTT
CCCCTTTCACCTTTTTCTCTCCACCCTTCTATTATTCTGTGTCTCCTCCC
CTATCCTCCTCTTCTTCCCCCCCCTTTCCCTCCCTTTTCTCCTTCACTTC
CTCATCTTTCCTTCAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_h24.g1 MSMg01no459_h24.g1 CHROMAT_FILE:
MSMg01no459_h24.g1 PHD_FILE: MSMg01no459_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:27 2005
         (337 letters)



>mm_chr12_5481188_5481924
          Length = 737

 Score =  636 bits (329), Expect = 0.0
 Identities = 332/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgtcatgcccctgtagtattccagcgtatggaaagccccactgccgtgtatccatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgtcatgcccctgtagtattccagcgtatggaaagccccactgccgtgtatccatttc 260

                                                                       
Query: 61  gtcctcagagatcactgatgtggttggcgggatgcactgaagatcactaccttttctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctcagagatcactgatgtggttggcgggatgcactgaagatcactaccttttctcct 320

                                                                       
Query: 121 catgctagttaacatgggagccttggtttctcacttgcagaatggggtacttacatttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgctagttaacatgggagccttggtttctcacttgcagaatggggtacttacatttat 380

                                                                       
Query: 181 ctcacagggtgaactcaggagccagtgtatataaagccactgttacagttcttggtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacagggtgaactcaggagccagtgtatataaagccactgttacagttcttggtacaa 440

                                                                       
Query: 241 tagacgttcagtaatggaaaccatggccgccaaaggggtaaggttcttgggatgttgcct 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagacgttcagtgatggaaaccatggccgccaaaggggtaaggttcttgggatgttgcct 500

                                            
Query: 301 gggtctgctgaggctggtggaagctccaggatg 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 gggtctgctgaggctggtggaagctccaggatg 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)