BAC Information

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BAC

Clone NameMSMg01-460G07
Chromosome12 (Build37)
Map Location 26,831,412 - 26,831,968
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460G07.T7 (MSMg01no460_g07.b1)MSMg01-460G07.TJ (MSMg01no460_g07.g1)
ACCAG545761AG545762
length712703
length of high quality
(start - end)
543 (64 - 606)557 (70 - 626)
definitionCHROMAT_FILE: MSMg01no460_g07.b1 PHD_FILE: MSMg01no460_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:37 2005CHROMAT_FILE: MSMg01no460_g07.g1 PHD_FILE: MSMg01no460_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
GTTTCCCCTGAAGACCAGCATGAACCTTTGTCAGCATCCTCATGAACTAA
ACAACTACTGGAATCTTGGATCTTCCATGCAGAGACAGCCATTCTTGGAC
TGGCTAGACCATAGCCTGCAAGCCACTCTAATAAATCTCCTTTCTCTGTA
TAGAGTGAGACCAATTCTATGATTCTGTTGCTCTAGAACCCTGACCAACA
CTAAGCATTAGATAGGGTGTGGGAGCTGCAGTGTAAACTATAACCACAAG
TTCTTGTATTTGAACACTTTCTCTCTAGCTGGTGGCACCATTACAGATGT
CATGGAACTTTTAGGATGGGCTTTGAGAACTTATGGCTCTCCCCACTTCC
AGTTTGCTCCCAAGGTTCTTTAGTGTTGCCTTCAAACTGTGATTAGTAGG
TTTCCTGCTCCAGGCACCTAGAACTGTAAGTCGACGGAAACCTTTTTACC
CTAAAGTTGCTTCAGATCATGGCATTTTATCATAGTAACAGAAAAGCACA
AAGACACCAGGTGTTTCCCTTTACACTTCCTCTCTAAAGCAATGGGGGGG
GGGTGTCTCCCCTCCCCCATCCTATTTTTTATCCTTATATCAAGGAAATT
GCCCCGTTTATATTTCTTGTTACTTTAGCTACCTCCCCCGTTAGCCCCAT
ATCATCTCCTTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGTATCTCAGAGAGGGGGAAGTCATGTGT
GCAGAGGCAGGCAATATAAAGAGAGATTCATCACTTGTTCTGATAACTTG
ACAGTGAAATTAAAAAGCTTAATTATTTCAGCATGAATTTTGAGAGTCTT
CTTTTCCCACTGAACATATGAAATAGTTTCAAAGCATTCCGCAGCAATAA
AACATCTGTGACCCAATTTACATAAAATGGAATAAAACCAGGAGCCATTA
GGAAAGTAAAGAGCACCAAGACAGTTGTGAGCAGTTGCTTCATTTTCAAA
CCGTAAATAAACCCTGTGCATATTGCAGGTGAAGGAAAGGTCTGTGTGCA
TTTTCAATATTTGACAGATGGGATGGTCAGTCCTTGGACCCAGGATACCC
CTGAGAAGAATGTACAAAAGTCCTAGCAAATCAAAAGCCAAAGGAAGAAG
CCACAGATGAAAAGGTGACAGTTTTAGAGGCTGGTGGAAAACACAACTGG
ATGGAAGAACATGCAAGACAAAATGCATAATTGAAACACGAATCACAAAT
GCAAAACTGGAAATACTGAATTCAAAATACTTATCAATGCCTTCCATCTG
ATTTCTTGTGCTGATAATAAAAATGTGAGCATGGGGGCTTGAAAATAGTG
TGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_g07.g1 MSMg01no460_g07.g1 CHROMAT_FILE:
MSMg01no460_g07.g1 PHD_FILE: MSMg01no460_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:37 2005
         (557 letters)



>mm_chr12_26831212_26832168
          Length = 957

 Score = 1062 bits (549), Expect = 0.0
 Identities = 555/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtatctcagagagggggaagtcatgtgtgcagaggcaggcaatataaagagagattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtatctcagagagggggaagtcatgtgtgcagaggcaggcaatataaagagagattc 260

                                                                       
Query: 61  atcacttgttctgataacttgacagtgaaattaaaaagcttaattatttcagcatgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcacttgttctgataacttgacagtgaaattaaaaagcttaattatttcagcatgaatt 320

                                                                       
Query: 121 ttgagagtcttcttttcccactgaacatatgaaatagtttcaaagcattccgcagcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagagtcttcttttcccactgaacatatgaaatagtttcaaagcattccgcagcaata 380

                                                                       
Query: 181 aaacatctgtgacccaatttacataaaatggaataaaaccaggagccattaggaaagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aaacatctgtgacccaatttacataaaatggaataaaaccaggagccattaggaaagcaa 440

                                                                       
Query: 241 agagcaccaagacagttgtgagcagttgcttcattttcaaaccgtaaataaaccctgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcaccaagacagttgtgagcagttgcttcattttcaaaccgtaaataaaccctgtgc 500

                                                                       
Query: 301 atattgcaggtgaaggaaaggtctgtgtgcattttcaatatttgacagatgggatggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atattgcaggtgaaggaaaggtctgtgtgcattttcaatatttgacagatgggatggtca 560

                                                                       
Query: 361 gtccttggacccaggatacccctgagaagaatgtacaaaagtcctagcaaatcaaaagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccttggacccaggatacccctgagaagaatgtacaaaagtcctagcaaatcaaaagcc 620

                                                                       
Query: 421 aaaggaagaagccacagatgaaaaggtgacagttttagaggctggtggaaaacacaactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaggaagaagccacagatgaaaaggtgacagttttagaggctggtggaaaacacaactg 680

                                                                       
Query: 481 gatggaagaacatgcaagacaaaatgcataattgaaacacgaatcacaaatgcaaaactg 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 gatggaagaacatgcaagacaaaatgcataattgaaacacaaatcacaaatgcaaaactg 740

                            
Query: 541 gaaatactgaattcaaa 557
           |||||||||||||||||
Sbjct: 741 gaaatactgaattcaaa 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)