Query= MSMg01no461_k14.b1 MSMg01no461_k14.b1 CHROMAT_FILE:
MSMg01no461_k14.b1 PHD_FILE: MSMg01no461_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:20 2005
(539 letters)
>mm_chr12_109548498_109549436
Length = 939
Score = 977 bits (505), Expect = 0.0
Identities = 530/545 (97%), Gaps = 12/545 (2%)
Strand = Plus / Minus
Query: 1 tctccttggacactgccagaccagaaagccttccagagtcctttccctggctctgcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctccttggacactgccagaccagaaagccttccagagtcctttccctggctctgcctgg 680
Query: 61 agtaggtagaattcatcattttctgccatgcaggcaggaaagtcactgcctccgggagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtaggtagaattcatcattttctgccatgcaggcaggaaagtcactgcctccgggagca 620
Query: 121 agcctgtgatcacacacaggagtgtgcgcatagataatgaatccatcttccaccctgccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcctgtgatcacacacaggagtgtgcgcatagataatgaatccatcttccaccctgccc 560
Query: 181 tagtcagtcctaccatgttggagtcagtcacatgacccccttacaggccattcctgtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagtcagtcctaccatgttggagtcagtcacatgacccccttacaggccattcctgtgtc 500
Query: 241 ctggctg------ttttttaactctccagaaccccgtgctctctgaggaccttcgatgga 294
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctggctgccacaa------aactctccagaaccccgtgctctctgaggaccttcgatgga 446
Query: 295 gtgcttcatgctgtggttgcttctctctggtgtgacaggtccttattgctactcctgcca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgcttcatgctgtggttgcttctctctggtgtgacaggtccttattgctactcctgcca 386
Query: 355 cccccagagatgactcagctctagatcccctgagaccttagcgatgcaattcctagacag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccccagagatgactcagctctagatcccctgagaccttagcgatgcaattcctagacag 326
Query: 415 agaggacagtggtagccacgcaccgactgctttcactagaagaccaggctgggctgtagc 474
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 agaggacagtggtagccacgcaccgactgctttcaccagaagaccaggctgggctgtagc 266
Query: 475 aggagaactctggctccagaaaggacaggaaaagggcagctaatctccaggccaggctcc 534
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagaactctggctccaaaaaggacaggaaaagggcagctaatctccaggccaggctcc 206
Query: 535 ttaca 539
||||
Sbjct: 205 ctaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_k14.g1 MSMg01no461_k14.g1 CHROMAT_FILE:
MSMg01no461_k14.g1 PHD_FILE: MSMg01no461_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:21 2005
(472 letters)
>mm_chr12_109326000_109326871
Length = 872
Score = 814 bits (421), Expect = 0.0
Identities = 455/471 (96%), Gaps = 9/471 (1%)
Strand = Plus / Plus
Query: 1 tcacttt-gggagtgtccacacaagctgggcgttcagccccaggacactggataggcacc 59
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 208 tcacttttgggagtgtccacacaagctgggcattcagccccaggacactggataggcacc 267
Query: 60 agaagctgctggcaagttggggagaccacacactcagaggctacctatcagaaggggaca 119
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 268 agaagctgctggcaagt--------ccacacactcagaggctacctatcagaaggggaca 319
Query: 120 gaaggcggaagctgaatgagaagccagtggtccctggacactggcctctcaccaccaagg 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaaggcggaagctgaacgagaagccagtggtccctggacactggcctctcaccaccaagg 379
Query: 180 ggttctgattggcttcatagttgtgttctgaaacggacactactcagtagagttcacatc 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 ggttctgattggcttcatagttgtgttctgaaacggacactattcagtagagttcacatc 439
Query: 240 aaccagtctttgactccaccatcagctcggccttgcccacaggggctctgctggtaagtg 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 440 aaccagtctttgactccaccatcagctcggccctgcccacaggggctctgctggtaagtg 499
Query: 300 cataggtcctggctagggagaaaaatgtggactggtctagggcagaggtccaccctgttc 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 cataggtcctggctagggagaaaaatgtggaccggtctagggcagaggtccaccctgttc 559
Query: 360 tgaggctccacagccagtgtgctggttcaggagagcttgatcccgctgctgcgggcacag 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 tgaggctccacagccagtgtgctggttcaggagagcttgatccggctgctgcgggcacag 619
Query: 420 ctgactttagccttgacattggatcaactgcttcctctttcatccagaagg 470
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgactttagcctcgacattggatcaactgcttcctctttcatccagaagg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
