Query= MSMg01no461_m21.b1 MSMg01no461_m21.b1 CHROMAT_FILE:
MSMg01no461_m21.b1 PHD_FILE: MSMg01no461_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:33 2005
(492 letters)
>mm_chr12_35070029_35070919
Length = 891
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 tcactccggaagatttatcattctcttcacaagcatgaacactatttccacagaaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tcactccggaagatttatcattctcttcacaagcatgaacactatttccacagaaagatg 632
Query: 61 cttaaccatgcagaaatcacatcttatatcatctctttgtgtgttttcgacagctttaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cttaaccatgcagaaatcacatcttatatcatctctttgtgtgttttcgacagctttaac 572
Query: 121 agatagaaattatgaatttttatccccagtgtatgtatatttagactatggcactcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agatagaaattatgaatttttatccccagtgtatgtatatttagactatggcactcagtg 512
Query: 181 ttttgacaaccttaaggaacaaacaaacaaataaacaaagactttctttatcctagaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttttgacaaccttaaggaacaaacaaacaaataaacaaagactttctttatcctagaacc 452
Query: 241 acttggttttattcttgtttcacctgggttttgtttctcctgttaggagtcaaaagaatt 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 acttggtttta-ccttgtttcacctgggttttgtttctcctgttaggagtcaaaagaatt 393
Query: 301 gtcaaaattttcacaaaattataaaagagctgccacaaccaccaaaaaaatagtaggata 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 gtcaaaattttcacaaaattataaaagagctgccacaaccaccaaaaaaatagtagaata 333
Query: 361 tgaacaattttctcctgagcctgccttataggctgtcagtctcccccaccctacccctca 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgaacaattttctcctgagcccgccttataggctgtcagtctcccccaccctacccctca 273
Query: 421 cccccaggacaataaaacagtgatctagttaaaaacaaacacacaacagtcattttccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cccccaggacaataaaacagtgatctagttaaaaacaaacacacaacagtcattttccac 213
Query: 481 atggaagagctt 492
||||||||||||
Sbjct: 212 atggaagagctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_m21.g1 MSMg01no461_m21.g1 CHROMAT_FILE:
MSMg01no461_m21.g1 PHD_FILE: MSMg01no461_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:33 2005
(507 letters)
>mm_chr12_34912859_34913767
Length = 909
Score = 919 bits (475), Expect = 0.0
Identities = 500/509 (98%), Gaps = 2/509 (0%)
Strand = Plus / Plus
Query: 1 aacacttggagcatatacagtgtttccagttgatcctttcccttttaatctttgagtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacttggagcatatacagtgtttccagttgatcctttcccttttaatctttgagtatt 260
Query: 61 tagatggtcatagtaaaaattagcaatgtttactccatacaattttgatttatttcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagatggtcatagtaaaaattagcaatgtttactccatacaattttgatttatttcctgt 320
Query: 121 ttttttt--agtcctatggaatttctttttaatttacattttactcagacttgtgaagac 178
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttttagtcctatggaatttctttttaatttacattttactcagacttgtgaagac 380
Query: 179 caagtcattaatctgaccaagtacagaaggtgcgctcacttctataggctgtaggctgat 238
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 381 caagtcattaatctgaccaagtacagaaagtgcgctcacttctgtaggctgtaggctgat 440
Query: 239 gccaacttttttgtgctaatattgtcagctgagtgatctgattttctcttttccagtttt 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaactttacagtgctaatattgtcagctgagtgatctgattttctcttttccagtttt 500
Query: 299 aaattctctgtagttttgaatgtgactagtaagagagatgttacagtggtttatcccttt 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 aaattctctgtagttttgaatgtgactaataagagagatgttacagtggtttatcccttt 560
Query: 359 taacagtaatcgtttacatttaagtttggagttcaagcatgcacttgctttgcttttggt 418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 taacagtaatcgtttacatttaagttcggagttcaagcatgcacttgctttgcttttggt 620
Query: 419 gtttcaattagtataaaggaaacttttcagttaaagcaaagaaataatgtgggttttggt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttcaattagtataaaggaaacttttcagttaaagcaaagaaataatgtgggttttggt 680
Query: 479 gtcactgtgcagaggaatataattatctg 507
|||||||||||||||||||||||||||||
Sbjct: 681 gtcactgtgcagaggaatataattatctg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 909
Length adjustment: 10
Effective length of query: 497
Effective length of database: 899
Effective search space: 446803
Effective search space used: 446803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
