BAC Information

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BAC

Clone NameMSMg01-461N13
Chromosome12 (Build37)
Map Location 30,709,883 - 30,859,341
singlet/doubletdoublet
Overlap geneTpo
Upstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496, Pxdn
Downstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461N13.T7 (MSMg01no461_n13.b1)MSMg01-461N13.TJ (MSMg01no461_n13.g1)
ACCAG546873AG546874
length759768
length of high quality
(start - end)
241 (71 - 311)449 (72 - 520)
definitionCHROMAT_FILE: MSMg01no461_n13.b1 PHD_FILE: MSMg01no461_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:36 2005CHROMAT_FILE: MSMg01no461_n13.g1 PHD_FILE: MSMg01no461_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,709,883 - 30,710,123)(30,858,896 - 30,859,341)
sequence
ATAATTTGCGGCCGCTAGACGACTACTATATTCAGAACACCGCGGAATTC
TCCACTCTTCCAAAATACACCAGGATGATGGTAAAGCAAGAGGACAGCAT
GGTAACTTGGTCGTTACCGGAATGGGCACAACCACAATGTGGATGATCAT
TCTGAGCGCATGAAGAGACTGCTGGTGGAGACTCTGTCCTTCAGGGTTGT
AGAAATCAAAGTAGAATGATATGTATTTCGGCAAGTATCCAACACTGTTT
TTCTCCTCCCAGGGACCTCTATTTGTGTTGAATATGGAAAGTAATCCATC
CCCACTGTCCATGGGTCATATCTTCTTTGTGAATCCAGAATAGAACCCTA
TTGCTTCAAAGCAGACCCAGAGAGGTTGCATATCCTATAGTAAGCACTAG
AGTAGCTGTTGAAAAGTAACTCCCCCAGTTATAAAAATGCTAACACACGT
CTTGTAATGAAATAATAAGAGTAGCTAAGTAATGAGCTGTTAGATGGTGA
GTGTTCAACCTGCCTGGATATGAGGGTCTCAGTCTCAATTTCAATCTCTC
TAAGCTAGGAAGGAGCAGTATGTACATTCTCAGAAAGTTCCTTTGGGCCC
CCTTGGTCATAAAAAACTGTGTAAGAGGAAACAATAATTCTTTATTTGTG
CTTTTTCATCCCCCCTCAAATGGGGGGTGTTTCTTTATATGTTTATGCCT
CCAATTCTTCTTATTATAATATGGTTTTTCCCCTAAATTCCCTTCCCTCT
CATGCGTTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGAGTTTCCTTTCAGAAGTTCAGGCTGT
GGTTAGGAAAAGGTGTGATCATATTCTCTTTTGTCAAGGCTTCTAGAACA
GGCTGAACATAAACCATCTAACTGCAGAGCATAGCAGCCTAAGGAAACAC
AGGGGTCCTGTGGGAAGCAGAGAGAAACACCACTGAGGGCTAGCTATCCT
TCAGATCTTGAAGCAATGAAGGATTTTGGCAATCAGCCACAGTTCCTTGA
CTGTCATCCGCCCATATTTATCTGATATCTGGGGGAAGGATATAGTTTTA
ACCTATCAAACATAGTTTGTGCTTCTGTTGTTGAAGTTGTAACCTCCTCC
TTACACAATGTTTCTCCATCATGTATGTAGAATGTGTTATACATGATGCC
CCTTTGAGCACTTGAGGTTCCTCTCAGACTCTAGAGGGGAATAGAGTGGT
CCTCCTTGTCTACCCTAAAGCTGTCTGTGTGGGACCTGGTTCCCAGGTTT
CTACTCATATTTCCTGCTAATTGACTGTATCATCTCGACGTAATAGTTTC
TGGGAATATCCTCTCTCAGGCTTAAACAGGTTGATTGGCTTTTTTTTTTC
TTTTCCCTACATCCTTTTTTTGCTTCCTGCTCCCCCGTTTCTCCCCCTCT
CCGAACATTTATTATCCTACTTTGCCCCCTCTCTTACTTTCTTCATCCAC
TCCTTCCTATTCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_n13.b1 MSMg01no461_n13.b1 CHROMAT_FILE:
MSMg01no461_n13.b1 PHD_FILE: MSMg01no461_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:36 2005
         (241 letters)



>mm_chr12_30709683_30710323
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatgatggtaaagcaagaggacagcatggtaacttggtcgttaccggaatgggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatgatggtaaagcaagaggacagcatggtaacttggtcgttaccggaatgggcaca 260

                                                                       
Query: 61  accacaatgtggatgatcattctgagcgcatgaagagactgctggtggagactctgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacaatgtggatgatcattctgagcgcatgaagagactgctggtggagactctgtcct 320

                                                                       
Query: 121 tcagggttgtagaaatcaaagtagaatgatatgtatttcggcaagtatccaacactgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tcagggttgtagaaatcaaagtagaatgatatgtatttcggcaagtatccaacactgctt 380

                                                                       
Query: 181 ttctcctcccagggacctctatttgtgttgaatatggaaagtaatccatccccactgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcctcccagggacctctatttgtgttgaatatggaaagtaatccatccccactgtcc 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no461_n13.g1 MSMg01no461_n13.g1 CHROMAT_FILE:
MSMg01no461_n13.g1 PHD_FILE: MSMg01no461_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:36 2005
         (449 letters)



>mm_chr12_30858696_30859544
          Length = 849

 Score =  862 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagtttcctttcagaagttcaggctgtggttaggaaaaggtgtgatcatattctcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttgagtttcctttcagaagttcaggctgtggttaggaaaaggtgtgatcatattctcttt 587

                                                                       
Query: 61  tgtcaaggcttctagaacaggctgaacataaaccatctaactgcagagcatagcagccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgtcaaggcttctagaacaggctgaacataaaccatctaactgcagagcatagcagccta 527

                                                                       
Query: 121 aggaaacacaggggtcctgtgggaagcagagagaaacaccactgagggctagctatcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aggaaacacaggggtcctgtgggaagcagagagaaacaccactgagggctagctatcctt 467

                                                                       
Query: 181 cagatcttgaagcaatgaaggattttggcaatcagccacagttccttgactgtcatccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cagatcttgaagcaatgaaggattttggcaatcagccacagttccttgactgtcatccgc 407

                                                                       
Query: 241 ccatatttatctgatatctgggggaaggatatagttttaacctatcaaacatagtttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccatatttatctgatatctgggggaaggatatagttttaacctatcaaacatagtttgtg 347

                                                                       
Query: 301 cttctgttgttgaagttgtaacctcctccttacacaatgtttctccatcatgtatgtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttctgttgttgaagttgtaacctcctccttacacaatgtttctccatcatgtatgtaga 287

                                                                       
Query: 361 atgtgttatacatgatgcccctttgagcacttgaggttcctctcagactctagaggggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atgtgttatacatgatgcccctttgagcacttgaggttcctctcagactctagaggggaa 227

                                     
Query: 421 tagagtggtcctccttgtctacccta 446
           ||||||||||||||||||||||||||
Sbjct: 226 tagagtggtcctccttgtctacccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)