BAC Information

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BAC

Clone NameMSMg01-462G11
Chromosome12 (Build37)
Map Location 97,006,178 - 97,006,421
singlet/doubletsinglet
Overlap geneLOC667688, Flrt2
Upstream geneLOC217786, LOC100039603
Downstream gene1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462G11.T7 (MSMg01no462_g11.b1)MSMg01-462G11.TJ (MSMg01no462_g11.g1)
ACCAG547298AG547299
length745801
length of high quality
(start - end)
244 (322 - 565)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no462_g11.b1 PHD_FILE: MSMg01no462_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:24 2005CHROMAT_FILE: MSMg01no462_g11.g1 PHD_FILE: MSMg01no462_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATAAATTGCGGCCGCTATACGACTCCTACTTTCATAGAACCGCGGN
AATCTAATGGATTACTTGACAGGCCTTCCAGGATGTTCTGAGACATAGGT
CACCCATAGTACACAAACTATCCGCATACACATTTAANAAGTGGGTTAAT
AAGGTGTGTAACTTTTTAATATTTCTATCAGCAGCATACTTCTCTAAATA
TTTTTCACAAAAACTTTGCAAACCTCTCAGCTATTCTTTCTGATGATAGG
GTTATGGTGGTTCTGATGGCAGATATAATGTTTCTTTACCTCATTACACG
AAGAACAAATGGGCTTTTTTATTGAATCAGTAGAAACGTCACTAAGGAAT
TTTGCTTCCTAAGCATATTGGCAGGGTGAGCAAAGCACAGAGACTTTAGA
AAATGGCACATTAGTTAACTGCTAGAATTTCTAGCTCCTAATGCATACTA
GAATTAAATAAAAATCCATTACCCATTCATGCATGCAAATTCATTTGTTG
GAGTCTTAACCTCTAATATTTTTAAATGGTGCTATATTTAGGGATAGAGG
CTAATATCTCTGGTGTTGTCATAAAAAAAATAGGAGAACAAGAAGAATAT
TTATCCATTAGACAGACCATGTTCTGGCATACAGGAATAAAGCTTGGTCT
TAAGGTCTCATGCCACCCCAGAAGAGGGCCTTCTTATAGAATTTAGTTCT
GTCCATATCTCTACCCGTGCAATTTTGTCCCTCCAAATGAAAGAT
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTANTCCAGAAATTCCTTATCTCTCCAGGGTTTTTAACTTG
AATAAGTGTGTGTTTTGTCAAGGGCTTTTTCAGCATGAGATAATCATGTG
ATTTTTTTCTTTGAGTGCATTTATATAGAGGATTACATTGTTGATGGATT
TTTGTATATTGAACAATCCCTGAATCCCTGGATGAAGCCTATTTGATCTT
GGTGAATAATAGTTTTGATGTGTTCTTGGATTCAGTTTGCAAGAATTTTA
TTGAGNATTTTTGCATTGTCATTCATACGCAAAATTGGTCTGAAGTTTTT
TTTCTCTGTTGGGTCTTTGTGTGGTTTAGGTATCAGAGTAAATGTGCTTC
ATAGAATGTATTAGATAATACTCCTTCTGTTACTATTTTGTACAACTGTT
TGAGGAGCGTTGGTATTAGCTCTTCTAGGGAATTGTTAGTGGAAGGATTG
AAGGAGGTTCAGGTTATATATTACTCTTATGAATTAAAATCTTTATCCAG
TAACTGTTTTCTTCTCTTATATCTTTATTTCTTATCTCACTCTTTTTGAT
CTTTATCTCCCTTCTTGTTCATGTTTCCTACTCTCTATTTGTAATATCAT
TTATCCCGCTTTTTTTTTGTTCTTCTCTTGCCACAAATCTCCAACTCCTT
ATTCCCTGTTCTTAATCGCTATTTCTCCTTGTCATACCCACCGCCTCCCC
GTACTCCCTTATCCTTATTACATTAGTCTTACGTTTCCTCTCTTCTTCTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_g11.b1 MSMg01no462_g11.b1 CHROMAT_FILE:
MSMg01no462_g11.b1 PHD_FILE: MSMg01no462_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:24 2005
         (244 letters)



>mm_chr12_97005978_97006621
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaatcagtagaaacgtcactaaggaattttgcttcctaagcatattggcagggtgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgaatcagtagaaacgtcactaaggaattttgcttcctaagcatattggcagggtgagc 385

                                                                       
Query: 61  aaagcacagagactttagaaaatggcacattagttaactgctagaatttctagctcctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagcacagagactttagaaaatggcacattagttaactgctagaatttctagctcctaa 325

                                                                       
Query: 121 tgcatactagaattaaataaaaatccattacccattcatgcatgcaaattcatttgttgg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 324 tgcatactagaattaaataaaaatccattacccattcatgaatgcaaattcatttgttga 265

                                                                       
Query: 181 agtcttaacctctaatatttttaaatggtgctatatttagggatagaggctaatatctct 240
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 264 agtcttaacctctaatattttaaaatggggctatatttagggatagaggctaatatctct 205

               
Query: 241 ggtg 244
           ||||
Sbjct: 204 ggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)