BAC Information

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BAC

Clone NameMSMg01-463M13
Chromosome12 (Build37)
Map Location 81,689,537 - 81,689,780
singlet/doubletsinglet
Overlap geneGalntl1
Upstream geneRad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik
Downstream geneLOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463M13.T7 (MSMg01no463_m13.b1)MSMg01-463M13.TJ (MSMg01no463_m13.g1)
ACCAG548354AG548355
length734752
length of high quality
(start - end)
531 (76 - 606)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no463_m13.b1 PHD_FILE: MSMg01no463_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:20 2005CHROMAT_FILE: MSMg01no463_m13.g1 PHD_FILE: MSMg01no463_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGA
TCCGCGGAATTCTCCAGATTCCCCTATTATTTTAGTAAAAGAGGAAAAGA
GGTAGAGTCGTCCCCGCCCCCCAGGTTCTGCAACCAACTCCCAAGCTCTT
CAAGTGGCAACACACATTGGTCAGTTACACTATCATCAGATCGGATTTGT
TCTTGTAAGTCAGCACAAAGGCCCTTCACCCAGCAGCTGGTCTTTAGCAA
CATATATTGCCCTAGCTAAATTACATTGTGCTAAGTTTTTTGGACCAGCT
GCTAGAACAGCTGACACCAATACCTTTTTATCTTGTGGGATCTCCCTATG
CTGTGTTGCCCAGTTATTTAGCATTTCTTTGACAAAGGAAAAATGTAAGC
CGTACAAAACAACAGATTCTTTAAAATGCTTTAGATCAATTCATTATAGG
CAAGAATACCATCATTAGCAGGCACATGCTGCACAAAGACTGGGAAGGCT
GTGTAGGCCCACGCAAATCCTCTGGTGGTGCACTCGGTTGCACATTAACC
CTTTGTGCTTGCTCTTCCCGGCTCCTTGTCTCACTGAGGCACTTTGGGCA
CCTGGTATCGAAAGTGCGTGGAGCAGGGCAGGGCAGCGTTTTATTGTCCA
GCCTATTTTCTTTCCCCTTTTCTCCATGCAAACCATTCCCGGTCCTAATC
ACTAAGTTTGAAATCTGTTGGTCTCCCCCTTGTT
TTTCTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACAAGAGAGACCTAGGGA
CAATGCTTCAAGTTTATCCTCTGTCCTCAGAAATGCCCAGAGTATCAGAC
ATGGGGTTGGCAAATGGAAAAACTGAGCCTGAGATACAGGTTTGCAACCC
AGAGGCATGGTGAGTAAGTAATTAGCTGGGGGTGTCTAGAGTGAGGAGAA
TGCCATGCTTCCCCAGGGTGTTTCCCACGGGGACCTACCTGATATAGGTG
AGGGCATTGCCCTCGGGGAAGTTGTTGGTANTCCGCTTCCTGAAGACATG
GCCCACTCGGCTGCAGGGCACAATCTCCAAGCTGCCACCACACATCCATA
CCCTGAAGGAGAGTTCTGCAGGAGAGGACAGTGTCAGAAGAAGAGAGATC
CCTCCAGGTGATGGTGGGAAGGAGCGAAGGGGATAGACTTCTTTCTCTTT
GGGGTCTCCATGAAAGTACATGCTGGGGTGTGAGCTCTTGTGCTAGGTAA
AATGGGTGTTTCCTTGCATAAGCTCATCCCATGCATACATACATACATGT
GCATATACCTCACTCACTTACACACACACACATCCACACTCACTCACATC
TCTCCTCTCCTTACTTTTTTTTTTTTTCACACCTCTATTTACCCCATTTC
CTTATATTCCCTTTGCTTCGGTATTATTTGCTTAGTGAGGGCCCCCTTAT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_m13.g1 MSMg01no463_m13.g1 CHROMAT_FILE:
MSMg01no463_m13.g1 PHD_FILE: MSMg01no463_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:20 2005
         (244 letters)



>mm_chr12_81689337_81689980
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaagagagacctagggacaatgcttcaagtttatcctctgtcctcagaaatgcccag 60
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 444 agacaagagagacctagggacaatgctccaagtttatcctctgccctcagaaatgcccag 385

                                                                       
Query: 61  agtatcagacatggggttggcaaatggaaaaactgagcctgagatacaggtttgcaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtatcagacatggggttggcaaatggaaaaactgagcctgagatacaggtttgcaaccc 325

                                                                       
Query: 121 agaggcatggtgagtaagtaattagctgggggtgtctagagtgaggagaatgccatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaggcatggtgagtaagtaattagctgggggtgtctagagtgaggagaatgccatgctt 265

                                                                       
Query: 181 ccccagggtgtttcccacggggacctacctgatataggtgagggcattgccctcggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccccagggtgtttcccacggggacctacctgatataggtgagggcattgccctcggggaa 205

               
Query: 241 gttg 244
           ||||
Sbjct: 204 gttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)