BAC Information

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BAC

Clone NameMSMg01-464P18
Chromosome12 (Build37)
Map Location 73,241,727 - 73,409,525
singlet/doubletdoublet
Overlap gene4930403N07Rik, Rtn1
Upstream gene2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik
Downstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P18.T7 (MSMg01no464_p18.b1)MSMg01-464P18.TJ (MSMg01no464_p18.g1)
ACCAG549271AG549272
length795760
length of high quality
(start - end)
194 (125 - 318)298 (325 - 622)
definitionCHROMAT_FILE: MSMg01no464_p18.b1 PHD_FILE: MSMg01no464_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005CHROMAT_FILE: MSMg01no464_p18.g1 PHD_FILE: MSMg01no464_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,241,727 - 73,241,920)(73,409,231 - 73,409,525)
sequence
ATAATTTGTCGGCGCAAAACGACNCACTAAAGTGCATCACTCGCGCGGAA
TTCACATGGATTTACCAGATATGGAAGGNTTGNAAATACTGAAGAGACAC
AGACTATGGGGGGGTATGCATACCCTATCTACAAGAATTATGACAATATT
TTATAGAAGGGATTTTGAATTTGACAGAATTGTTTTGTGCCTAATCCCCC
CCACAGGTCCAGGAGGACTGCAGTACTGACTGAGGACAAACAAACAGAAC
CTTCTGTGTCCATTAATGTCGTCATGAGGTGAGATTTTTGCTTTACGTGA
GATAAGAAAGTTAAGTTTTGCTGGTTTGGCGCGTAGTTCAAAATAGCCCT
CTGGCTGATTACCCTGAAAGTAATAGGATGGAAATAGCCTTCTTAAAATT
TTTGAATAGCTAACAGTGCACTGAGGTAGGAGTCAGTCTTGTCAAGTAGG
AAGTCACTGTACTGATATAGGGTTGTTACATATAACTATTTGCGCTCTTA
GGGAATTCACCACTACGCAATGGCCCTCCCGGATTCTCTTATACCCTTTC
CTGCATGCCTTTAGTACTACGCTCCTGTTCTTCAGTATATGCCCTCGTTG
GTTTCTACCGATTTTGCTCCTCCCTCGTACGCTTGCCATGCCCCATGTGA
TTTTCCTTTTTCTATTCTTTTTCTCCCATCACGTTTTATGCCTTTCCTTT
TTTCACCTCCTCCTATGGTTTTTCCCCGTATTTTTATTGCCCCCTCCCCT
CCTCCCTTTACGCCCTATTCATTCCCCGCTCATTTTGTATTCTTA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAACTCTTCAGAAGGAAAATGGTCACATCACCACTT
CCGAGAGCCCTGAGGAGCCGGAGACCCCCGGACCCTCGTTACCAGAAGTG
CCCGGGATGGAGCCACAGGGCTTATTGAGTTCTGATTCTGGAATAGAGAT
GACTCCTGCTGAGTTCACTGAGGTGAACAAGATCCTAGCTGACCCCCTAG
ACCAGATGAAGGCAGAAGCCTACAAATACATTGACATAACCAGGCCACAG
GAGGCAAAAGGCCTTGATTGTTTAACACCCTGGGCTAGAAGATAAAGACT
TGGACTTTATAGACAAGGACACTGAAGTCTCCACAAAAGCAGAAGGGGTT
CGAGCACCAAACCAGCCAGCTCCTGTGGAGGGGAAACTCATCAAGGACCA
CTTATTCGAAGAATCTACCTTTGCTCCTTACATAGATGAGCTCTCTGATG
AGCAGCACAGGGTGTCTCTGGTCACTGCCCCTGTCAAGATCACACTGACG
GAGATCGAACCTCCTCTTATGACTGCCACACAAGAGACAATCCCCGAGAA
GCAAGACCTGTGTCTGAAGTCTAGTCCTGACACAGTGCCCACTGTCTCTG
TCTCTTAGCCTGAAGATGACAGTCCAGGATCTGTCACGCCTCCTTCTTCT
GGAACCGGTATAGACATTGGCAATCCTTCACTCTGGGGAACACTACCTGC
ACAGGGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p18.b1 MSMg01no464_p18.b1 CHROMAT_FILE:
MSMg01no464_p18.b1 PHD_FILE: MSMg01no464_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:55 2005
         (194 letters)



>mm_chr12_73241527_73242120
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatctacaagaattatgacaatattttatagaagggattttgaatttgacagaattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatctacaagaattatgacaatattttatagaagggattttgaatttgacagaattgtt 260

                                                                       
Query: 61  ttgtgcctaatcccccccacaggtccaggaggactgcagtactgactgaggacaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgcctaatcccccccacaggtccaggaggactgcagtactgactgaggacaaacaaa 320

                                                                       
Query: 121 cagaaccttctgtgtccattaatgtcgtcatgaggtgagatttttgctttacgtgagata 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaccacctgtgtccattaatgtcgtcatgaggtgagatttttgctttacgtgagata 380

                         
Query: 181 agaaagttaagttt 194
           ||||||||||||||
Sbjct: 381 agaaagttaagttt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_p18.g1 MSMg01no464_p18.g1 CHROMAT_FILE:
MSMg01no464_p18.g1 PHD_FILE: MSMg01no464_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:55 2005
         (298 letters)



>mm_chr12_73409031_73409728
          Length = 698

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaccctgggctagaagataaagacttggactttatagacaaggacactgaagtctccac 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 495 acaccctgggctagaagataaagacttggactttaaagacaaggacactgaagtctccac 436

                                                                       
Query: 61  aaaagcagaaggggttcgagcaccaaaccagccagctcctgtggaggggaaactcatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaagcagaaggggttcgagcaccaaaccagccagctcctgtggaggggaaactcatcaa 376

                                                                       
Query: 121 ggaccacttattcgaagaatctacctttgctccttacatagatgagctctctgatgagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaccacttattcgaagaatctacctttgctccttacatagatgagctctctgatgagca 316

                                                                       
Query: 181 gcacagggtgtctctggtcactgcccctgtcaagatcacactgacggagatcgaacctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcacagggtgtctctggtcactgcccctgtcaagatcacactgacggagatcgaacctcc 256

                                                                  
Query: 241 tcttatgactgccacacaagagacaatccccgagaagcaagacctgtgtctgaag 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcttatgactgccacacaagagacaatccccgagaagcaagacctgtgtctgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)