BAC Information

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BAC

Clone NameMSMg01-465J16
Chromosome12 (Build37)
Map Location 31,956,635 - 31,956,989
singlet/doubletsinglet
Overlap geneLamb1-1
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068
Downstream geneDld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465J16.T7 (MSMg01no465_j16.b1)MSMg01-465J16.TJ (MSMg01no465_j16.g1)
ACCAG549745AG549746
length774772
length of high quality
(start - end)
430 (37 - 466)356 (67 - 422)
definitionCHROMAT_FILE: MSMg01no465_j16.b1 PHD_FILE: MSMg01no465_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:46 2005CHROMAT_FILE: MSMg01no465_j16.g1 PHD_FILE: MSMg01no465_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGGAATTCTCAG
CTGTGGCATACCGAAGGGCTGAGAAGCACCTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGT
GAGGATGTGGAGAAAGAGGGACACTCTTCCATTCCTGGTGGGATTGCAAG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGA
TATAGTACCACCGTAAGATCCAGCAATACCTCTCCTGGGCATATACCCAG
AAGATGCTCCAACTGGTAAAAAGGACACATGTTCCACTAGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACA
GAGGACTGAATACAAAAAGTGTGGTACATTTACATAATGGAGTACTACTC
AGCTATTAAAAACAATAAATTTTAGCTGGGCGTGGTGGCACACGCCCTTT
ATTCCTACTCTTGGGAGCCAAGGCCAGCAAATTTCTGAGTTTGAGGCCAC
CCTGGCCACCAAGGGAGTTCCGCACAGCCCGCGTTATCCCAAAAACCTGG
TCTCTAAAAAAATTCCACCAAACAAACATGGGTTTTTTAATTCTTGGTCA
TGGAGGTACTGAGGTTTTTTCCTCGGGGGGAACCCCCCCTTAAAAACCCC
CTTTTTTCCCCCCCTCCCATGCAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGTGGCTTTTTTAGTGTGTTCAAGTGGGTCTCT
GACCCTCAGGGCACCATGCACCGTACAGCTTTGTTTGTGCAGGCTTTTCC
CCTGGAAGGGGAGAAGTTTGTGTTTGTTCAGGGACAGGCTGAGTTATCTG
ATGGGTTCTTTGCCTCAGAGGCAGAAGTGTATAGTGGAAGGTTGCTTGCT
TGCACCAAGGATGAGTTTCCCTGACTTGGCACGCGTCACCAGGTGTGATG
CTCACCTGCTTTCTTTGCTGTCAGTTGGGGGGCGGGGGACACGTAATTAT
TTGTATTTCTTCTGTGTCTCTGCAGACTGACCCCCTACTGTGCACTGCAA
GTGTGTGTTGGGGGAGGGGGTTNNCTTTCCTCGTACGTGTGTTTCTTGTG
TCCTTGTCTTTCCTTCCCTTTTCCCCCTCCCTTTTTCTTCTTTCTTTTTC
TCCCTGCCCCCCCCCTTTTTTTTTTCCTCGTCCTTCTCCCCTCCTCTTTC
TTTTTTTCCGTTTTCTCTCTTGTTCCTTTGTGCCCCCCTTTCCTCTCCTC
TTTTCGCCCCTTCTCTTTCTTTTTTTTTCCTCCTCTTCTTTTCTTTCCTC
TCTCTTTTTTTCGCCTTTCCTTTCCCGGTTCCCCTCTTCCTTCTCTTTCG
CCTTCCTCCTTCGCTTTTTTCATTTTTTCCCCTTTTTTCGCTCTCTTTCT
TTCCCTCTCTTCATTGTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_j16.g1 MSMg01no465_j16.g1 CHROMAT_FILE:
MSMg01no465_j16.g1 PHD_FILE: MSMg01no465_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:46 2005
         (356 letters)



>mm_chr12_31956435_31957190
          Length = 756

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtggcttttttagtgtgttcaagtgggtctctgaccctcagggcaccatgcaccgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtggcttttttagtgtgttcaagtgggtctctgaccctcagggcaccatgcaccgtac 260

                                                                       
Query: 61  agctttgtttgtgcaggcttttcccctggaaggggagaagtttgtgtttgttcagggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctttgtttgtgcaggcttttcccctggaaggggagaagtttgtgtttgttcagggaca 320

                                                                       
Query: 121 ggctgagttatctgatgggttctttgcctcagaggcagaagtgtatagtggaaggttgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggctgagttatctgatgggttctttgcctcagaggcagaagtgtatagtggaaggtcgct 380

                                                                       
Query: 181 tgcttgcaccaaggatgagtttccctgacttggcacgcgtcaccaggtgtgatgctcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttgcaccaaggatgagtttccctgacttggcacgcgtcaccaggtgtgatgctcacc 440

                                                                       
Query: 241 tgctttctttgctgtcagttggggggcgggggacacgtaattatttgtatttcttctgtg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgctttctttgctgtcagttggggggcgggggacatgtaattatttgtatttcttctgtg 500

                                                                  
Query: 301 tctctgcagactgaccccctactgtgcactgcaagtgtgtgttgggggagggggt 355
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttgcagactgaccccctactgtgcactgcaagtgtgtgttgggggagggggt 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)