BAC Information

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BAC

Clone NameMSMg01-466I06
Chromosome12 (Build37)
Map Location 78,352,812 - 78,353,007
singlet/doubletsinglet
Overlap geneFut8
Upstream geneMthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466I06.T7 (MSMg01no466_i06.b1)MSMg01-466I06.TJ (MSMg01no466_i06.g1)
ACCAG550444AG550445
length776767
length of high quality
(start - end)
365 (49 - 413)235 (135 - 369)
definitionCHROMAT_FILE: MSMg01no466_i06.b1 PHD_FILE: MSMg01no466_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:01 2005CHROMAT_FILE: MSMg01no466_i06.g1 PHD_FILE: MSMg01no466_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATC
CGCGGAATTCACTCGTTTCCCCGGATCCTTCTACGGCAAAGCTTTTATTG
CTTACTTCTCAGGAAGACCCGAAGCCCGGAAAATGGCGCTGCTTATATAG
CCCTCAGCGTGATGTTTCAGCACCTGATGTGGTGTGACAGCTCCTGATTC
GTTGCTCGCCCATCACCCCATTACTACGCCCTGATATGGGCAGTGACTGG
GCGTGAATTCACTCTTGCACTTGCAGGCTTGTTTACTAGTTAGGGGCAAT
GGAAGCCAGCGCCATCTTATAATGGCGATTGCTCACAGCACGGCTCTCCA
CAGGAGGGAACAATCATGAAAAATCTAGAAGCTGGCCATTGGTCAGTCTG
TTCCACCTGGCTCATCAGCTCTAAGATGTATAAAGGAGACAAGCTAACAT
GATAACAGAGAAAACCCATCCAGACTCATTACAAGCGACCATCACTGAGT
GGATCACCTGTGTGCTGGCTAATTCTCCTTGAAGTCCATTTCTGATGAAA
ATCTTTGTGATCTTCTTCCATTCTCGACAATTTTGTTTTGTGATTAAAAT
AACCTTCTCTTTTGTCTTTGTATTCCGCACCCCCTATTGCGCATTTTTTT
TATTTCTCCTCCAATAATTTCCTCCTTCCCTTCCTTCATGTTTGTTCCCA
TCCCTCTCTCAATTTCCTCTCTTTTTTTCTCCATTTTAATCATATCTTTC
TTTATTCCATCTCTTCCTTTTTTTTC
NNNCCTCTATGATAGTGGGTAGGTCTGGNGGCCGCCTGGGTGCAAATATT
TAGGNGACACTANAGAAGTTACTTCACTGGGGTGAGCCAGCCTAGNCTAC
AAAGCAAACTCCAGGAGAGCATTTTTACCCGAGTAAAACTCCAATCTCAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAGCCATAA
GGTAAAAAGGGAACACCCCTCGGTCAGGCAACTAGGATGGCTTTAACCTC
TTTACTCAAAAAACTAAATAGGTAACTGGATCAATCTTCAGTATCTAAAA
GCAGTGTACTAGAATCAGATATTTTTTTAAATCTGAGGGGTTGTTTTGTT
TTGGGGTTTTACTTTTTTTTTGCCCNNCCGGGGGGGGGGGGGGGGGGGGN
GNGCNGGGGNNGGGGGGGGTGGTGGGGTTGTGTGTTTTGGTTGTGTGGTG
TTGTGTGGGGGTGGGGGGGGTTTTGGTGTGTATTGAAGGTTGGTTGGCTG
TGGTTTTATTTATCTTGTTAGTTAGTAATATAGTCGATATTATTTTTTCT
TGGTGAAGTGAGAGAGCTTTTTGTGTTTTGTTGTTGTGAGTGTATTATTG
CTTCTACCAATTAGCGTTTAGGATGTAGTATATTAGGCGTGGACGCTATC
ATATTTTTATTTTTGTGTATGATACGTGGTAAAGAGGGGATATGCTTAAG
GATGTAGTTAGGACCTCTATACAATGATTTCAATGATTATGCAGGTCTGC
CCCCTCCCATATTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_i06.g1 MSMg01no466_i06.g1 CHROMAT_FILE:
MSMg01no466_i06.g1 PHD_FILE: MSMg01no466_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:02 2005
         (235 letters)



>mm_chr12_78352553_78353187
          Length = 635

 Score =  356 bits (184), Expect = e-103
 Identities = 193/196 (98%)
 Strand = Plus / Minus

                                                                       
Query: 39  aaataaataaataaataaatagccataaggtaaaaagggaacacccctcggtcaggcaac 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaataaataaataaataaatagccataaggtaaaaagggaacacccctcggtcaggcaac 396

                                                                       
Query: 99  taggatggctttaacctctttactcaaaaaactaaataggtaactggatcaatcttcagt 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taggatggctttaacctctttactcaaaaaactaaataggtaactggatcaatcttcagt 336

                                                                       
Query: 159 atctaaaagcagtgtactagaatcagatatttttttaaatctgaggggttgttttgtttt 218
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 335 atctaaaagcagtgtactagaatcagatattttgaaaaatctgaggggttgttttgtttt 276

                           
Query: 219 ggggttttactttttt 234
           ||||||||||||||||
Sbjct: 275 ggggttttactttttt 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)