BAC Information

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BAC

Clone NameMSMg01-466L05
Chromosome12 (Build37)
Map Location 82,682,549 - 82,682,874
singlet/doubletsinglet
Overlap geneMed6
Upstream geneGalntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21
Downstream geneTtc9, LOC100041821, Map3k9, Pcnx, Sipa1l1, LOC432675, EG666911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466L05.T7 (MSMg01no466_l05.b1)MSMg01-466L05.TJ (MSMg01no466_l05.g1)
ACCAG550585AG550586
length752770
length of high quality
(start - end)
240 (76 - 315)326 (83 - 408)
definitionCHROMAT_FILE: MSMg01no466_l05.b1 PHD_FILE: MSMg01no466_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:17 2005CHROMAT_FILE: MSMg01no466_l05.g1 PHD_FILE: MSMg01no466_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAATAGGA
TCCGCGGAATTCCCTTTGCCTTCTAGTCTCTTGAGGGTTAGGTGCATCAT
CTCTGAATGAACACAGACCTAGAAGTCCTCTGTTGTACATGTGTTGGGGG
CCTCATATCAGCTGGTGTATGCTGTCTCTTTGGTGTTCCAGTGTTTGAAA
GATCTCTGGGGTCCAGATTAATTGAGACTCCTGGTCTTCCTACAGGATCA
TCCTTCTCCACCTCAGCTTCTTCCAGCCTTCCCTGATTCAACAACAGAGG
TCAACTGCTTCTGTCTATTGTTTGGGTACAAATATCTGCATCTGACTCTT
TCAGCTGCTTGTTGGGTCTTTTAGAGGGCCATTATGATAGATCCCTTTTT
GTAAGCTCTCCATAGCCTCAGCAATAGTGTCAAGTCTTGGGACCTCCCCT
TGAGCTGGATCCCACTTTGGAACTGTCACTGTACCTTCTTTTCCCCAGGC
TCCTCTCTATTTTCCATCCCTGTAACTCTTTCATACGTTACCAATTATAG
GCCAGAGATTGTTTCTTTTGTAATGTTAACTCCCTCCCTTAATTTTCTCC
CTACTGTCCCATCTTTTTTTGTTGATTCTCCCCTCCTTTCTTATTCTTTT
TTTTTTTTTCTATTTCTCTTTTTCCTTGTCTTTTTTTCTGATATTTCTTT
CTCTTATTTTTTTATTTTATCGGTATGGTTATTGTGTTTCCTAGTAGTTG
CG
CCACCCCACGATGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGCTTTTGATGAAG
CTATGTCATACTGTCGATACCATCCTTCCAAAGGATATTGGTGGCACTTT
AAAGATCACGAAGAACAAGGTAAGTGGAGTGCCCAGGCCCTCCCAAAACA
GTTTGGTTCTCTGGGGATGAAGCTCGAGGGCTTGTAACGTTACCTAGATA
GATTTTAATTTTTCAGAAGGTGATGGCATTGCGGCCCTTGTGTTCATGTC
ATAGGTGCAGGAATAGTAACATCACAACAGTTATTTTGTCCGTGGGCTCT
TATGTTCACAAGTGTTGTAAAGACGATTGAAGGTTTTAAATGGCTTAAAA
TGCAAAGAGGAGGGACAGTGATGATGGATGAGCAAAGGTTATTTTTTATT
TCTTGAGTTATCTTGGATTTTTGGAATTTTTCTTCTCGCTAGTCTTTCTA
AGTTAGGTATTATGAGATACTATTCTGGATGCCCTTGCTTTCAAATGTCC
AGCCCTATGTTTTCCGTTTTCTCCCACTTGACAGTTGTCAATCCCCTGTG
GATGTAGGGTGGGCGTTTCTGTAGCTTTTCGTGACGTCCCTTAGTTCCAT
TAATTTTTATTCTATTTCCCTTTCCCCCCCCCTTATTGCCCTTTACCTTC
TACTTCCTATATCCATCCGTATACGTTGTAACTCCTCTTAACTTACCTAT
CTTCTATTTTCCACAACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_l05.g1 MSMg01no466_l05.g1 CHROMAT_FILE:
MSMg01no466_l05.g1 PHD_FILE: MSMg01no466_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:17 2005
         (326 letters)



>mm_chr12_82682349_82683074
          Length = 726

 Score =  607 bits (314), Expect = e-178
 Identities = 323/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcagcttttgatgaagctatgtcatactgtcgataccatccttccaaaggatattggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agtcagcttttgatgaagctatgtcatactgtcgataccatccttccaaaggatattggt 467

                                                                       
Query: 61  ggcactttaaagatcacgaagaacaaggtaagtggagtgcccaggccctcccaaaacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggcactttaaagatcacgaagaacaaggtaagtggagtgcccaggccctcccaaaacagt 407

                                                                       
Query: 121 ttggttctctggggatgaagctcgagggcttgtaacgttacctagatagattttaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 406 ttggttctctggggatgaagctcgagggcttgtaacgttacctagataggttttaatttt 347

                                                                       
Query: 181 tcagaaggtgatggcattgcggcccttgtgttcatgtcataggtgcaggaatagtaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcagaaggtgatggcattgcggcccttgtgttcatgtcataggtgcaggaatagtaacat 287

                                                                       
Query: 241 cacaacagttattttgtccgtgggctcttatgttcacaagtgttgtaaagacgattgaag 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 286 cacaacagttattttgtccgtgggctcttatgttcacaagcgttgtaaagacgattgaag 227

                                     
Query: 301 gttttaaatggcttaaaatgcaaaga 326
           ||||||||||| ||||||||||||||
Sbjct: 226 gttttaaatggtttaaaatgcaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)