Query= MSMg01no467_i13.b1 MSMg01no467_i13.b1 CHROMAT_FILE:
MSMg01no467_i13.b1 PHD_FILE: MSMg01no467_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:26 2005
(609 letters)
>mm_chr12_39173868_39174876
Length = 1009
Score = 1162 bits (601), Expect = 0.0
Identities = 604/605 (99%)
Strand = Plus / Plus
Query: 5 gaattcaacacaatctacatgcatcaaagggaataaattagaaaatatctgcaaagcgtt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacacaaactacatgcatcaaagggaataaattagaaaatatctgcaaagcgtt 264
Query: 65 ggcaaaatttgacatcttcttttgcctgtgatgataaacaagataattaattctgtcttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaaaatttgacatcttcttttgcctgtgatgataaacaagataattaattctgtcttc 324
Query: 125 atcttttaagtgaggatatgaactctgagattggattataatgtatgtatactgtacatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcttttaagtgaggatatgaactctgagattggattataatgtatgtatactgtacatt 384
Query: 185 acattatgcagatagctgcacaaagaggagtcacgtagtaggactgtcactttctgtgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acattatgcagatagctgcacaaagaggagtcacgtagtaggactgtcactttctgtgtc 444
Query: 245 ttgaacaaatcatactcattagcaagtctgtgctaaagacatttgttagccattgttatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaacaaatcatactcattagcaagtctgtgctaaagacatttgttagccattgttatt 504
Query: 305 cattctctacatatttctgtgggttttttagggtaatttagaaggcagtgcctaccttgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattctctacatatttctgtgggttttttagggtaatttagaaggcagtgcctaccttgc 564
Query: 365 ctaaatataaaagcaatgttcatcttagagctgtagatgctgtatttggcattcaaagcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaaatataaaagcaatgttcatcttagagctgtagatgctgtatttggcattcaaagcc 624
Query: 425 aggcaagcagaatgacttccaaaaatttaaattcagtgattaagtcaattaaatttagaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggcaagcagaatgacttccaaaaatttaaattcagtgattaagtcaattaaatttagaa 684
Query: 485 acaagaataggatttcatgttgcacaattatacctagatgttaaaattattgaaaaaaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaagaataggatttcatgttgcacaattatacctagatgttaaaattattgaaaaaaga 744
Query: 545 tcatggcatttgaaaggtttcatttcacacatacacaaaatgcatttaacaatatcatga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcatggcatttgaaaggtttcatttcacacatacacaaaatgcatttaacaatatcatga 804
Query: 605 taatt 609
|||||
Sbjct: 805 taatt 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_i13.g1 MSMg01no467_i13.g1 CHROMAT_FILE:
MSMg01no467_i13.g1 PHD_FILE: MSMg01no467_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:26 2005
(512 letters)
>mm_chr12_39233584_39234497
Length = 914
Score = 903 bits (467), Expect = 0.0
Identities = 502/515 (97%), Gaps = 4/515 (0%)
Strand = Plus / Minus
Query: 1 atgggttattaatttaaagtgctataaatacagatataaaataatctttcagtatattac 60
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 714 atgggttattaatttaaagtgttacaaatacagatataaaataatctttcagtatattac 655
Query: 61 tcaggtgggcaggaagattgttcttagattcttaggactaaggttttccataaaattcta 120
| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 654 taagatgggcaggaagattgctcttagattcttaggactaaggttttccataaaattcta 595
Query: 121 cataagtattatgtaccaacatagccatgcaaattatcactatagaaacacctatgtacc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cataagtactatgtaccaacatagccatgcaaattatcactatagaaacacctatgtacc 535
Query: 181 tatgaataaatgaagtacttgttgcaaatctgcagaggtgaccacaacatataaaagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tatgaataaatgaagtacttgttgcaaatctgcagaggtgaccacaacatataaaagaat 475
Query: 241 tcataatttctgtttagaaaaaaaaaa---cactttatgaccatttttttttcttttgtg 297
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 474 tcaaaatttctgtttagaaaaaaaaaaaaacactttatgaccatttttttt-cttttgtg 416
Query: 298 cttctaccttgaacagagttctccgcacagccagtggaagcttgcattgcacagtactgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cttctaccttgaacagagttctccgcacagccagtggaagcttgcattgcacagtactgt 356
Query: 358 tccttatctggtggctctgagctccacccactgtcctgtaagtcagacgccatccgcaaa 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcattatctggtggctctgagctccacccactgtcctgtaagtcagacgccatccgcaaa 296
Query: 418 gtactcatttctgttcccatgtaacagagcgtacaccaagcaagagctgcttaggtctga 477
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 295 gtactcatttctgttcccatgtaacagagcttacaccaagcaagagctgcttaggtctga 236
Query: 478 ctcatttttaactgtttaatattttatttgctgcc 512
|||||||||||||||||||||||||||||||||||
Sbjct: 235 ctcatttttaactgtttaatattttatttgctgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space: 453808
Effective search space used: 453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
