Query= MSMg01no468_p14.b1 MSMg01no468_p14.b1 CHROMAT_FILE:
MSMg01no468_p14.b1 PHD_FILE: MSMg01no468_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:23 2005
(246 letters)
>mm_chr12_14188694_14189338
Length = 645
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%), Gaps = 1/245 (0%)
Strand = Plus / Plus
Query: 1 caggttgctgtgtacacatgtgcccaccatcagatagaaagacttacctcaggaactctt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 caggttgctgtgtacacatgtgcccaccatcagatagaaagacatacctcaggaactctt 260
Query: 61 agagtcaattcaaaatcaagggagacaaatggatttaaacagttgtaggtcctaagcttg 120
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 agagtcaattcaaaatcaagcgagacaaatggatttaaacagt-gtaggtcctaagcttg 319
Query: 121 ggtaatttaaagtgaacatagtcaaatggttggaaatttatgaaaaaacagggaaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtaatttaaagtgaacatagtcaaatggttggaaatttatgaaaaaacagggaaagaaa 379
Query: 181 aacgatagctcatgagctgttttcattaaactgcattcgtcattgtgatgctagaccatg 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 aacgatagctcatgagctgttttcattaaactgcattcgccattgtgatgctagaccatg 439
Query: 241 aggtc 245
||||
Sbjct: 440 tggtc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no468_p14.g1 MSMg01no468_p14.g1 CHROMAT_FILE:
MSMg01no468_p14.g1 PHD_FILE: MSMg01no468_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:23 2005
(506 letters)
>mm_chr12_14353146_14354049
Length = 904
Score = 828 bits (428), Expect = 0.0
Identities = 494/532 (92%), Gaps = 30/532 (5%)
Strand = Plus / Minus
Query: 1 aacattactaggaaataactgcctggaggaagaaaaaggaattggcaaacagaaaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 aacattactaggaaataactgcctggaggaagaaaaaggaattggcaaagagaaaggaac 621
Query: 61 atggggacacctaccatggagagagttattatggagataaacacacac--acacacac-- 116
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 atggggacaccttccatggagagagttattatggagataaacacacacagacacacacag 561
Query: 117 acacacacacacacacacacacagaattttgctatagaaatgcttattttggattgaaaa 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 acacacacacacacacacacacagaattttgctatagaaatgcttattttggattggaaa 501
Query: 177 aaaactcagactgctctccttgcaactatgttaagaacaattttcaagaattgcaaaaat 236
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 aaaactcagactgctctccatgcaactatgttaagaacaatttccaagaattgcaaaaat 441
Query: 237 agctttacttttc--tcngttcagataatgagatatattcttgttttgtacattctaatt 294
||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 agctttacttttcatt--gttcagataat--gatatattcttgttttgtacattctaatt 385
Query: 295 ataccttttcattgtctctgactggaaagtaaaaaaaaaaaaaaa--------------- 339
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaccttttcattgtctctgactggaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa 325
Query: 340 -----gagcacacacttatttgactataaacaattaaaatcaggtacctactggctagaa 394
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagggagcacacacttatttgactataaacaattaaaatcaggtacctactggctagaa 265
Query: 395 tattcctacaatttttaattgaattagtaatgtccatttaagtcattgtggtcgttaact 454
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 tattcctacaatttttaattgaattagtaatgtccatttaagtcattgtggttgttaact 205
Query: 455 acaaaggcttagaaagcttctcccaatgcctcaagtataccgctatgcatta 506
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 acaaaggcttagaaagcttctcccaatgcctcaagtatacccctatgcatta 153
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 904
Length adjustment: 10
Effective length of query: 496
Effective length of database: 894
Effective search space: 443424
Effective search space used: 443424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
