BAC Information

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BAC

Clone NameMSMg01-469N03
Chromosome12 (Build37)
Map Location 120,857,924 - 120,858,416
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469N03.T7 (MSMg01no469_n03.b1)MSMg01-469N03.TJ (MSMg01no469_n03.g1)
ACCAG552966AG552967
length761757
length of high quality
(start - end)
516 (50 - 565)494 (77 - 570)
definitionCHROMAT_FILE: MSMg01no469_n03.b1 PHD_FILE: MSMg01no469_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:32 2005CHROMAT_FILE: MSMg01no469_n03.g1 PHD_FILE: MSMg01no469_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGTCCTATCCCTAAACATGATAAAACCAATCTACAGCCAA
CAAGTAGCCAACATCAAGGTACATTGTGAGAAGCTGGAAGCATTCCCACT
AAAATCAGGGACCAGACAAGGCTGCCCACTCTTTCCCTACTTATTGAACA
TTGTACTTTGAAGTCCTAGCCAGAACAATTCAACAACAAAAGGAGATCAA
GGGGATATACATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGACCCTATTTTATTCCACCAGAGAACTCCT
AAACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTGCA
ACATATCAGTGCCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTCACAACAGTCACAAATAATATAAAATACCT
TGGTGTGACTCTACCTAAGGAAGTGAAAGATCTGCATGATAAGAACTTTA
AGTCTCTGAAGAAAGCAATTAAGAAAGATCTCCCATGCTCATGGATTGGC
TGGATCAATACCGTAAAAATGGCTATCTTGCTTAACAGCATCTACCCATC
CTATGCCCTTCCCCCCCAAATTCCCACTCAATTCCTCCACGTAATACAGA
GGGCAATCTGCTATTCTTTTTGCACATCAAACATACCAGGATACCTCAAA
CCCCTCTCATG
CTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGTAGAATACTTGCCTACTAT
ATATTCAATCATCATCAGGAAAAAAATGAATAAATCTTTTCTTTTGGGTC
CAGATTACTGCCAAGTATTTTAATTACTGTCTCTATTTTGATTATTGTGT
ACTTATTTCTGGAATATCGACTTGGTAATTCATCAAAATTTAAATGTTTT
TTCATATTTTTAAGTATTTTATTTTTGAGATTAATATAATTACATAATTT
TCCTCTTCCCTTTATTCTCTAAAACCCTCCAATATGCCCTTCTTTTTTCA
TTAATTAGTGTTATGTACACACATGTGAATACATATTATGCATATTCACA
CACACATACATACACATATATTCCTAATACATAGGTACAACATGTTCAGT
CTGGATGTTACTTGAATATGTGTTTTTATGGATGATAATTTGGTACTGAG
TAGCAAATTGGTGTGCTTTTAGACCCTAACCCATTTCTCCTTTTTTTTTC
AGAATTCCTTTGCTCATAGATTTTTGTATAGGGTTGAGGCCTCCTGCGAT
TTTCCATGTCGATTTGGGCATGCTTATTAGTATCGCCTTTGCCTACTCCA
TGTTAACCCACCCTGTTGTTAAAATTTATGCCTGGTTTTTTAAGTACCCT
TACCAAAAAATATTTTTTTTTTTGGCTATAAAACTTCCCAATCCTTTCCT
CAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_n03.g1 MSMg01no469_n03.g1 CHROMAT_FILE:
MSMg01no469_n03.g1 PHD_FILE: MSMg01no469_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:32 2005
         (494 letters)



>mm_chr12_120857724_120858617
          Length = 894

 Score =  940 bits (486), Expect = 0.0
 Identities = 492/494 (99%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggtagaatacttgcctactatatattcaatcatcatcaggaaaaaaatgaataaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggtagaatacttgcctactatatattcaatcatcatcaggaaaaaaatgaataaatc 260

                                                                       
Query: 61  ttttcttttgggtccagattactgccaagtattttaattactgtctctattttgattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcttttgggtccagattactgccaagtattttaattactgtctctattttgattatt 320

                                                                       
Query: 121 gtgtacttatttctggaatatcgacttggtaattcatcaaaatttaaatgttttttcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtacttatttctggaatatcgacttggtaattcatcaaaatttaaatgttttttcata 380

                                                                       
Query: 181 tttttaagtattttatttttgagattaatataattacataattttcctcttccctttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaagtattttatttttgagattaatataattacataattttcctcttccctttatt 440

                                                                       
Query: 241 ctctaaaaccctccaatatgcccttcttttttcattaattagtgttatgtacacacatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ctctaaaaccctccaatatgcccttcttttttcattaattagtgttatgtacacacatga 500

                                                                       
Query: 301 gaatacatattatgcatattcacacacacatacatacacatatattcctaatacataggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatacatattatgcatattcacacacacatacatacacatatattcctaatacataggt 560

                                                                       
Query: 361 acaacatgttcagtctggatgttacttgaatatgtgtttttatggatgataatttggtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaacatgttcagtctggatgttacttgaatatgtgtttttatggatgataatttggtac 620

                                                                       
Query: 421 tgagtagcaaattggtgtgcttttagaccctaacccatttctcctttttttttcagaatt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tgagtagcaaattggtgtgcttttagaccctaacccatttctcctttttttt-cagaatt 679

                         
Query: 481 cctttgctcataga 494
           ||||||||||||||
Sbjct: 680 cctttgctcataga 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)