BAC Information

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BAC

Clone NameMSMg01-470J08
Chromosome12 (Build37)
Map Location 106,509,288 - 106,665,576
singlet/doubletdoublet
Overlap geneLOC100040310, 2810011L19Rik, LOC100040339, EG668081
Upstream geneEG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1
Downstream geneD430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470J08.T7 (MSMg01no470_j08.b1)MSMg01-470J08.TJ (MSMg01no470_j08.g1)
ACCAG553552AG553553
length862783
length of high quality
(start - end)		244 (81 - 324)375 (76 - 450)
definitionCHROMAT_FILE: MSMg01no470_j08.b1 PHD_FILE: MSMg01no470_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:33 2005CHROMAT_FILE: MSMg01no470_j08.g1 PHD_FILE: MSMg01no470_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,665,333 - 106,665,576)(106,509,288 - 106,509,662)
sequence
TCTCTATAATTTGCGCTCGCTATACGACNCACCATAGTCAGACAAGGCGC
GGAATTCCACTCTGGTGCCCCACCCACACTAAATAAATTTTAAGAAATGG
TGAATTTCCTCTCACAGGAAAGGCTCCGAGGAAGCCCCGGAATGTTCCTA
TTAGCTTTCCATAGAAACAGCCGTCTGAGCAGCAGGGCCACCCAGGGGCT
CTCTATATGAGCTACTGTGGTTGAAAGCCCTTTTAAAATTACCAAGTATT
TAGCGCTCTCTCTATTGTGATGGTCCCAGCTTCATGATGGAGGTGCTCTT
CAGCGCTATGCTTTGAGGCTCGTGTTCGTGCGTGTGCGCGCGTGTGTGCG
CGTGCGTGTCCCCTTTTTTTCCCCCTTCCCTCCCCCCCCGTTCCCCCCCC
CCCCCTTCTCCCCCCCCCCTCTTCCCTCTCCCCCTTTCCCTCTCCCTTCC
CATCTCTCCTCTCCCTCCCTCTCTTTTCCCCCCCTCCCCCCCATCTTCTT
TTCCTTCTTTCTCTCCCTCTCCCCTTTCCCTCCCCCTCCCTCCTTCTCTC
TCTCCCCCCGCTCTTTCCTCCTTTTCCTCCTCTCTCTCCCCCCTTCCCTT
TCTCTCCACTCTCCTCCCTCCCACTCTCTTTCTTCTCTCCCCCCCTCTTT
TGTTTCCTTTTTTTTCTCCCCCCTCTCCCCCTCCCTTCTCCTTTTCCCTC
CCTCTCCCCTTCTTCTTCCCTTCCACCCCCTTGCCCTTCGCCTCCCTCTC
TTTTCCCATTCCCCTCCCCTTTTTTTTCCTCCTTCTCTTCCCCCCCCACC
TCTTTTCTTCTCGCTCTCCTCTCCCTCATCTTCTCCCTCCCTCCCCTTTT
TCTCCTCCTTTC

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGAGAGGAAAACTGTTTGGCATTT
TTAACCAATTGTTCTGATACTTGAGCACAGCGGCAGCCGGGTTGTGACAG
CACCTTATCTGTCACTGCGTCCTGGCGGCTGTCACAGCTCACTCCTCCCC
GCCTTCAGCAGGGGCCAGGCTTCTGGCTTCCTGATTTTAAAGAGCAGCAA
GCAATGCTTCCACAAGGATATCCAATGTCTCGAAATGTCAGACACACCAG
TTGTTGCTGTCAGCTTTTATGGCCTGTGATATTTATCAGAAGGAAATAAT
TAAGTCCCCCAGAACCCGGGATCTTCCTTGCCGTTTTCAGGAGAGTCAGG
GGGAGGGGGCAGTGATGATAAAAACACACAGTCTCAAGGCGTCTTGTACA
CACTGGCGCGTGAGCCCACACCATCGCCTCTGTCCGTGTAATGCCCAGAG
CCCTTTATACACCCGTTCTGTTTTAACGCCAAAAGCATCGCCTGGAGCAC
TCACTTACCCTCAACAAAGCTGATGTCTCCTATGTGCATACCAATGCTGC
TTTATTCCCCCCTTTCGTGTCCTATCCCGCCGTTTTTGTCCACTTCCACG
TTCTCTTTTTCTCCCCCCCTGTTGTTTCCCGTTCCGCCAAATTCTCTTGT
TTTAATTGCCCAATATCATTCATTTTTATAGTTGCGGAATTACTCCTCCT
CTCTGGTTTCCCTCTATCATATCACTTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_j08.b1 MSMg01no470_j08.b1 CHROMAT_FILE:
MSMg01no470_j08.b1 PHD_FILE: MSMg01no470_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:33 2005
         (244 letters)



>mm_chr12_106665133_106665776
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataaattttaagaaatggtgaatttcctctcacaggaaaggctccgaggaagccccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaataaattttaagaaatggtgaatttcctctcacaggaaaggctccgaggaagccccgg 385

                                                                       
Query: 61  aatgttcctattagctttccatagaaacagccgtctgagcagcagggccacccaggggct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 aatgttcctattagctttccatagaaacagccgtctgaggagcagggccacccaggggct 325

                                                                       
Query: 121 ctctatatgagctactgtggttgaaagcccttttaaaattaccaagtatttagcgctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 ctctatatgagctactgtggttgaaagcccttttaaaattaccaagtatttagtgctctc 265

                                                                       
Query: 181 tctattgtgatggtcccagcttcatgatggaggtgctcttcagcgctatgctttgaggct 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tctattgtgatggtcccagcttcatgatggaggtgctcttcagtgctatgctttgaggct 205

               
Query: 241 cgtg 244
           ||||
Sbjct: 204 cgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no470_j08.g1 MSMg01no470_j08.g1 CHROMAT_FILE:
MSMg01no470_j08.g1 PHD_FILE: MSMg01no470_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:33 2005
         (375 letters)



>mm_chr12_106509088_106509862
          Length = 775

 Score =  679 bits (351), Expect = 0.0
 Identities = 369/375 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagaggaaaactgtttggcatttttaaccaattgttctgatacttgagcacagcggca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagaggaaaactgttcggcatttttaaccaattgttctgatacttgagcacagcggca 260

                                                                       
Query: 61  gccgggttgtgacagcaccttatctgtcactgcgtcctggcggctgtcacagctcactcc 120
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 261 gccgggttgtgacagcaccttatccgtcactgcatcctggcggctgtcacagctcactcc 320

                                                                       
Query: 121 tccccgccttcagcaggggccaggcttctggcttcctgattttaaagagcagcaagcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccccgccttcagcaggggccaggcttctggcttcctgattttaaagagcagcaagcaat 380

                                                                       
Query: 181 gcttccacaaggatatccaatgtctcgaaatgtcagacacaccagttgttgctgtcagct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttcacaaggatatccaatgtctcgaaatgtcagacacaccagttgttgctgtcagct 440

                                                                       
Query: 241 tttatggcctgtgatatttatcagaaggaaataattaagtcccccagaacccgggatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tttatggcctgtgatatttatcagaaggaaataattaagtcccccagaacctgggatctt 500

                                                                       
Query: 301 ccttgccgttttcaggagagtcagggggagggggcagtgatgataaaaacacacagtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgccgttttcaggagagtcagggggagggggcagtgatgataaaaacacacagtctc 560

                          
Query: 361 aaggcgtcttgtaca 375
           |||| ||||||||||
Sbjct: 561 aaggtgtcttgtaca 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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