Query= MSMg01no471_b04.b1 MSMg01no471_b04.b1 CHROMAT_FILE:
MSMg01no471_b04.b1 PHD_FILE: MSMg01no471_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:11 2005
(689 letters)
>mm_chr12_88422197_88423286
Length = 1090
Score = 1266 bits (655), Expect = 0.0
Identities = 679/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctctatagagctgctggcagctcagtcctagaggtaacctttcttcccacctt 63
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ggaattcctctagagagccgctggcagctcagtcctagaggtaacctttcttcccacctt 831
Query: 64 ggagtccaagaaacagccacctatggtcacaggcctccattgtgggtcctagcacccacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggagtccaagaaacagccacctatggtcacaggcctccattgtgggtcctagcacccacc 771
Query: 124 atgaccctttcctttccctcccagaagactatgcttagagaaggactggtcctcaccttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 atgaccctttcctttccctcccagaagactatgcttagagaaggactggtcctcaccttt 711
Query: 184 ctgatgtgaactctttctggctctgatttggataagaagaggcgggtacaatatgtgcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctgatgtgaactctttctggctctgatttggataagaagaggcgggtacaatatgtgcag 651
Query: 244 agtgaccccaggcgcatcagctccatgcctgtcccaagcagagccgctgtgatcacgtag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agtgaccccaggcgcatcagctccatgcctgtcccaagcagagccgctgtgatcacgtag 591
Query: 304 ttgatgaagaatgcaccattgtctgggaggaacacgcacctgggcagtggaggaagatgg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 590 ttgatgaagaatgcaccattgtctgggaggaacacgcacctgggcagtggaggaaggtgg 531
Query: 364 gaggcggtgggaggacggagggaagagatgttgggggagaaaaagacaaacagtagagag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaggcggtgggaggacggagggaagagatgttgggggagaaaaagacaaacagtagagag 471
Query: 424 agagcgaaggacatagagaataaggatccataaacagacaacaccagctatctcttaaag 483
|||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 470 agagtgaaggacagagagaataaagatccataaacagacaacaccagctatctcttaaag 411
Query: 484 tcttgccaaaatcattctatgcactaaggg-tttcgcaggacaaaagttgcttggacttg 542
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 410 tcttgccaaaatcattctatgcactaagggttttcgcaggacaaaagttgcttggactta 351
Query: 543 gccatacttcggacaaagactatgaagatctaaaagatccatgcttctccaatctccgcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gccatacttcggacaaagactatgaagatctaaaagatccatgcttctccaatctccgcc 291
Query: 603 aaggaattgctgcttgggtgactacctcaggaaaacggggtttcctgtgccaaggtcctc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaggaattgctgcttgggtgactacctcaggaaaacggggtttcctgtgccaaggtcctc 231
Query: 663 ctgggtacagtgggctgacctatgaca 689
|||||||||||||||||||||||||||
Sbjct: 230 ctgggtacagtgggctgacctatgaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space: 733320
Effective search space used: 733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b04.g1 MSMg01no471_b04.g1 CHROMAT_FILE:
MSMg01no471_b04.g1 PHD_FILE: MSMg01no471_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:11 2005
(609 letters)
>mm_chr12_88273637_88274645
Length = 1009
Score = 1073 bits (555), Expect = 0.0
Identities = 592/609 (97%), Gaps = 8/609 (1%)
Strand = Plus / Plus
Query: 1 caggttagcctgagttacatgagcatctgtctctcaaagacaaccaaaccaaccaagtaa 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 caggttagcctgagttacatgagcccctgtctctcaaagacaaccaaaccaaccaagtaa 260
Query: 61 gcaaacaaagaagagaccgggctggggagagaactcaatgttgtcttgcacagcacctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaacaaagaagagaccgggctggggagagaactcaatgttgtcttgcacagcacctga 320
Query: 121 acccagtgggaaaaaccgaagctgggtgtgtgctcagggatgcagagcgagagaccgggg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccagtgggaaaaaccaaagctgggtgtgtgctcagggatgcagagcgagagaccgggg 380
Query: 181 atccctagggtccatttgtcagtcagctccaggtccccgtggaagactttgtctcaaaaa 240
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 atccctagggtccacttgtcagtcagctccaggtcccagtggaagactttgtctcaaaaa 440
Query: 241 acaaggtagatggctcctgaggagggatatggtaggttgtcctctggtctatgcatttga 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaggtagatggctcctgaggagagatatggtaggttgtcctctggtctatgcatttga 500
Query: 301 gtacacacacagacacacagacacacagacattctctctgtctatctgtctcagatactt 360
||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 501 gtacacacacagacacacagaca--------ttctctctgtctgtctgtctcagatactt 552
Query: 361 ttatgcgcatgattgttttgcctgggtgtgtatctgaggagctcctaggacccctgcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttatgcgcatgattgttttgcctgggtgtgtatctgaggagctcctaggacccctgcctc 612
Query: 421 ccagtgcagagagcagggactctgaatctcccccttgtttcagcagagtatcagttaatc 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccagtgcagacagcagggactctgaatctcccccttgtttcagcagagtatcagttaatc 672
Query: 481 atatggacaaggacagaaagacatacatacaggagctaagcacactcactctgcatagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatggacaaggacagaaagacatacatacaggagctaagcacactcactctgcatagcc 732
Query: 541 tggcagagagggctcctaccacccctcggacctgcctcctgaaggttttaggcacttaaa 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 733 tggcagagagggctcctaccacccctcggacctgcctcctgaaggttttaggtacttaaa 792
Query: 601 atctttgcc 609
|||||||||
Sbjct: 793 atctttgcc 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
