BAC Information

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BAC

Clone NameMSMg01-472E07
Chromosome12 (Build37)
Map Location 60,497,426 - 60,497,658
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneLOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472E07.T7 (MSMg01no472_e07.b1)MSMg01-472E07.TJ (MSMg01no472_e07.g1)
ACCAG554842AG554843
length791783
length of high quality
(start - end)
267 (49 - 315)388 (77 - 464)
definitionCHROMAT_FILE: MSMg01no472_e07.b1 PHD_FILE: MSMg01no472_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:51 2005CHROMAT_FILE: MSMg01no472_e07.g1 PHD_FILE: MSMg01no472_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCCTCTATCAACACAGTTCCCAACACACACACACACACACA
CACACACACACACACACACACACACACACACGTCTCTAGGAAATATAAGT
GTAAACTTAGTGTTTAGATCTTCACTGACTCCTTGTTCCTGTGGACACCC
TCATCGTTCACACTGGGTTGATGATATTGCTTTACACTCTCCCCGCCCCC
GCCCTCGCCCCCCCTCCGCCCCTATCCCCGCTCCAGCTCCCGCCCCCACC
CACACCCCCCCCACATCTTTTTTCCCACTCCCGCCCCCCCCCCCCTTCTT
TCCTCCTCTATTCTGCTTTCACCAACCTTTTTTTTTCAGATTCTTTTCTT
CTAAAGCTTTGGATGCGTCACCCAAAAATATGTCTACAATGGCGCTTTGC
CGAAACCATTTTTGTTAATGTGTCACTCTGTTTCCCAATTTACTCATACA
CTCTTCTCTTGTCCTCCTTTTCCTCCTCTTTATATTTCTTTTTCTATTTA
TTCACCTTCTCTGCTTTCTCTTTATATATTTTGCCCTTCTTCCCTGCCCA
TATTTTCCATCCTATCTCCTCTCTTATTTCTTTTTTTTCCCACTCTCATC
TTTCTTCGTTTCGCGCCTCCCTTTTTATTCTTTTTTTTTAATACCCTTTC
ACTTTCACATCCTTCCTCGTCCATCCCCCTTTATTATTCCTTCTCTCCTA
TTTTAATCCTCCGTGTGTTCGGTCGCCTTTCTTTATGTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATCT
TTTAAGGGGGTTATTTGATTTTTCTGGAGTCCACCCTCTTGAGTTCTTTA
TATATATTGGATTTTAGTCCCCTATCTGATTTAAGATAGATAAAGATCCT
TTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCT
TGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTT
ACAGCACAAGCCATTGCTGTTTTATTCAGGAATTTTTTCCCTGTGCCCAT
ATCTTCGAGGCTTTTTCCCACTTTCTCCTCTATAAGTTTCAATGTCTCTT
GTTTTATGTGAAGTTCCTTGATACACTTAGATTTGACCTTATTACAAGGA
GAGAGGAATGTGTGGATTTCGATTCTTCTACCTGATAACCCCCTGTTGTG
CCCTCCCCATTTGTTGAAAATGGCGTTCCTCTTCTACGGGATGTTTTTAA
CGCCCTTGTGGAATAATATTTGTCCCCTCTTCGGGTGCCTTCCCCGTCTA
TGCCCTTTATGTTGTTTCCTGTGGCCCACCTCCATATTTATATTCCTGTT
TCTTCGTTTTTTATTTTATTCATATCTCTGCCCCATTCCTAACGTATTAC
CACGGTTTTTGTTTGTTTCGCATATAATCGCTTTTTCCACCTTTAGCACC
CCCGCCTTCTCCTTGCTTTTTTTTTTCCCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_e07.b1 MSMg01no472_e07.b1 CHROMAT_FILE:
MSMg01no472_e07.b1 PHD_FILE: MSMg01no472_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:51 2005
         (267 letters)



>mm_chr12_60497215_60497881
          Length = 667

 Score =  350 bits (181), Expect = e-101
 Identities = 225/261 (86%), Gaps = 34/261 (13%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctctatcaacacagttcccaacacacacacacacacacacacacacacaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 444 gaattcttcctctatcaacacagttcccaacacacacacacacacacacaca-------- 393

                                                                       
Query: 65  cacacacacacacacacacgtctctaggaaatataagtgtaaacttagtgtttagatctt 124
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 --------------------tctctaggaaatataagtgtaaacttagtgtttagatctt 353

                                                                       
Query: 125 cactgactccttgttcctgtggacaccctcatcgttcacactgggttgatgatattgctt 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 352 cactgactccttgttcctgtggacaccctcatcgttcacattgggttgatgatattgctt 293

                                                                       
Query: 185 tacactctccccgcccccgccc------tcgccccccctccgcccctatccccgctccag 238
           ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||
Sbjct: 292 tacactctccccgcccccgcccccgccctcgccccccctccgcccctatccccgctccag 233

                                
Query: 239 ctcccgcccccacccacaccc 259
           ||||||||||||||| |||||
Sbjct: 232 ctcccgcccccacccccaccc 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)