Query= MSMg01no472_e12.b1 MSMg01no472_e12.b1 CHROMAT_FILE:
MSMg01no472_e12.b1 PHD_FILE: MSMg01no472_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:52 2005
(532 letters)
>mm_chr12_35517927_35518858
Length = 932
Score = 967 bits (500), Expect = 0.0
Identities = 524/532 (98%)
Strand = Plus / Plus
Query: 1 atggcaacctgttatgttgcagcaagactgaagccggactccctgtttcctgaacaccac 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 atggcaacctgttatgttgcagcaagactgaagccagactccctgtttcctgaacaccac 260
Query: 61 tctaaccctttgaggtttttgctttttttctgagcattatattacagttttcttttacta 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 261 tctaaccctttgaggtttttgctttttttctgagcattatcttacagttttcttttatta 320
Query: 121 tctcattttagtaatctggaactattttggaaatatgctattttaaaaaaagaatgcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcattttagtaatctggaactattttggaaatatgctattttaaaaaaagaatgcttt 380
Query: 181 ttcaatctatgttactaacaactactatcactatcatttttctatgtatctactttatct 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ttcaatctatgttactaacaactactatcactaccatttttctatgtatctactttatct 440
Query: 241 ttcccttatttacaagtcaaatgtatggtggagtctactccactggaagcccttctgctt 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccagatttacaagtcaaatgtatggtggagtctactccactggaagcccttctgctt 500
Query: 301 ggtggagacaaggaatccctggaagaggctgccaagctattctatccaaattggtaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtggagacaaggaatccctggaagaggctgccaagctattctatccaaattggtaagct 560
Query: 361 ccaagttcagcaaaacatcctgcctcagtaaataaagtgaacagcaaccaacaaggacat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaagttcagcaaaacatcctgcctcagtaaataaagtgaacagcaaccaacaaggacaa 620
Query: 421 gtgaaatcaaccaaaaaagacatccttgcctcttcacacaagaacacacacatacatgta 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaaatcaaccaagaaagacatccttgcctcttcacacaagaacacacacatacatgta 680
Query: 481 caccaacaaagacatgaagccacattaacacacacacacacacacacacaca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccaacaaagacatgaagccacattaacacacacacacacacacacacaca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_e12.g1 MSMg01no472_e12.g1 CHROMAT_FILE:
MSMg01no472_e12.g1 PHD_FILE: MSMg01no472_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:52 2005
(502 letters)
>mm_chr12_35692277_35693179
Length = 903
Score = 934 bits (483), Expect = 0.0
Identities = 498/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 1 tccataaataggagatgataaagaaagccaatagttctttttaatatttatttgaccttc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 703 tccataaataggagatgataaagaaagccaatagttcttcttaatatttatttgaccttc 644
Query: 61 tgatatgtacatggaaatttctaaactaacactgcataggaaaattactgcatctatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgatatgtacatggaaatttctaaactaacactgcataggaaaattactgcatctatgga 584
Query: 121 ttttttataatagttccaccagaaaaagagaccctgaatcccaggaaaaaatcaagatgg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttttttacaatagttccaccagaaaaagagaccctgaatcccaggaaaaaatcaagatgg 524
Query: 181 gagttagcccaaccactaatgtaataattgcttatgcttggtagcttcctaagttgtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagttagcccaaccactaatgtaataattgcttatgcttggtagcttcctaagttgtcat 464
Query: 241 tgtttggggaaatgaaggtcataacaacattcaagtgattagatcatactttctccactc 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgcctggggaaatgaaggtcataacaacattcaagtgattagatcatactttctccactc 404
Query: 301 atgaatgaatgatactcaattttcattaattgctttgtgtttaatcctgcatgtgcagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgaatgaatgatactcaattttcattaattgctttgtgtttaatcctgcatgtgcagga 344
Query: 361 ggattttgttaataaattttccctggcggtaagccttcattaatttgatcttccctgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggattttgttaataaattttccctggcggtaagccttcattaatttgatcttccctgaaa 284
Query: 421 gcaaatctatccatgacagaga-ttttttttctcaccatttactttaagacttttagtca 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcaaatctatccatgacagagatttttttttctcaccatttactttaagacttttagtca 224
Query: 480 aggcaaaccttatttgtttaata 502
|||||||||||||||||||||||
Sbjct: 223 aggcaaaccttatttgtttaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
