BAC Information

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BAC

Clone NameMSMg01-473H20
Chromosome12 (Build37)
Map Location 16,076,446 - 16,250,037
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473H20.T7 (MSMg01no473_h20.b1)MSMg01-473H20.TJ (MSMg01no473_h20.g1)
ACCAG555777AG555778
length754762
length of high quality
(start - end)		515 (70 - 584)498 (80 - 577)
definitionCHROMAT_FILE: MSMg01no473_h20.b1 PHD_FILE: MSMg01no473_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:35 2005CHROMAT_FILE: MSMg01no473_h20.g1 PHD_FILE: MSMg01no473_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,249,523 - 16,250,037)(16,076,446 - 16,076,943)
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAATGCATTTCCACTTCTTTAATCTTTACTCATCGATATTATT
ATTGTTGTCATTATTTTGTCCACCTGGTCTAAAACCATTTCTGCTCCATT
TCCTTACATTTTCTTATAGACCCTGATAGCAATCCTTTGGATATCTTTTT
CAAGGCCCTTTTGAAGCCATCCCCTTTAATTTAGCATAGTGCATTGAAAG
GATACTGCTCAGTGTAGGCATGCTGAAGTGACGTCCTTAAGTTTGCTGCC
TTTGCTTTCTCTCTCAGCCACTTCTTAGGAAGGTTTCCCTAGGCAGGAGC
AAAGGCTTCACCAGTATCTTGTCTCCTAAGAAGTTTCCCCCATGGGCCCA
GAGTGTTTGCATGCTTGCTTGCTTATTTATTTATTTATTTATGTATTTAT
GTATTTATTTATTTATTTATTTACTCTGCTTTCTCTGGGTGCTGCATGTA
TTGGGTATGTAACATCTCTTCAGCCCCTGATGGATTGAATATTGGCAAAG
GCCATAGTCAATTAGTTCTGTTTGACTTATGACTCAAGTGTCTAAAGGAG
AAAGCCACAAGCAGATAGAGAACAGATGATAGACATATATGAAACCCTAG
GAAGGACTGGGCGTCTCTCTAGCATGGTGTGGTTCTTCCCCAAAAAGGGA
AGTGAGACTCTGCTGTCTTTCCCCCCAGAAACCCTATGCAGATTCAAGTG
TTCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCACAAGGTATATGGGGA
GGTCAGAGGACACCCTCAAGTGCCAGTCCTAAGACACCCTCCACCTTCTG
GAACAGAGTCTTTTACTGTCCTCTTCCCCATATAGACAGGCCTAGCTGAC
TCGCAAGCTTCTAAGCATACACCTGTCTCTGCCTCCTGTGTCACCATCAA
TAGAGTTACAGGCATGCAGAGCCACACACAGCTTTTTATATCAGTTCTGG
AGGCCTGAGCATTCTCACGCTTGCACAACTTCTGCTTTTTACCAACTGAG
CCATCTCCCTACTGGCCAACCCTGATTTGTTTTAACTCAACTGTTTCCAA
AGTGTGAACTTTACTGATGGCAACTCCATGTTATAATGTCAAATGTTTGG
ACACCCCTCGGAGGGAGGTGTTTATGGCAAGATGCTCGCACCGAGGTTAC
TTACGACTGTACAAAGAAGAGCCATGAGTACTTTGGAACTGACTTCCCAA
GCAGACTTTTGCACCCTCCAGACATTCTAGATGATACACACACACCCACT
CCCCAGAAAATCAGAATGTGAGATTTCTAGAAAACAGGGTCCTTGTAAAT
GCAACTAGCTAAATGGTGTAAGAGGCATATGAAAGTCTTGAGGCTTTGTA
TTTCCTATAGACTTAAGTCCCTATGGTTAATATAATTTGTTGACCCTTAC
TCCTACCGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_h20.b1 MSMg01no473_h20.b1 CHROMAT_FILE:
MSMg01no473_h20.b1 PHD_FILE: MSMg01no473_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:35 2005
         (515 letters)



>mm_chr12_16249485_16250399
          Length = 915

 Score =  996 bits (515), Expect = 0.0
 Identities = 515/515 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctttaatctttactcatcgatattattattgttgtcattattttgtccacctggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acttctttaatctttactcatcgatattattattgttgtcattattttgtccacctggtc 494

                                                                       
Query: 61  taaaaccatttctgctccatttccttacattttcttatagaccctgatagcaatcctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taaaaccatttctgctccatttccttacattttcttatagaccctgatagcaatcctttg 434

                                                                       
Query: 121 gatatctttttcaaggcccttttgaagccatcccctttaatttagcatagtgcattgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gatatctttttcaaggcccttttgaagccatcccctttaatttagcatagtgcattgaaa 374

                                                                       
Query: 181 ggatactgctcagtgtaggcatgctgaagtgacgtccttaagtttgctgcctttgctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggatactgctcagtgtaggcatgctgaagtgacgtccttaagtttgctgcctttgctttc 314

                                                                       
Query: 241 tctctcagccacttcttaggaaggtttccctaggcaggagcaaaggcttcaccagtatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tctctcagccacttcttaggaaggtttccctaggcaggagcaaaggcttcaccagtatct 254

                                                                       
Query: 301 tgtctcctaagaagtttcccccatgggcccagagtgtttgcatgcttgcttgcttattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgtctcctaagaagtttcccccatgggcccagagtgtttgcatgcttgcttgcttattta 194

                                                                       
Query: 361 tttatttatttatgtatttatgtatttatttatttatttatttactctgctttctctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttatttatttatgtatttatgtatttatttatttatttatttactctgctttctctggg 134

                                                                       
Query: 421 tgctgcatgtattgggtatgtaacatctcttcagcccctgatggattgaatattggcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tgctgcatgtattgggtatgtaacatctcttcagcccctgatggattgaatattggcaaa 74

                                              
Query: 481 ggccatagtcaattagttctgtttgacttatgact 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 73  ggccatagtcaattagttctgtttgacttatgact 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_h20.g1 MSMg01no473_h20.g1 CHROMAT_FILE:
MSMg01no473_h20.g1 PHD_FILE: MSMg01no473_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:35 2005
         (498 letters)



>mm_chr12_16076246_16077143
          Length = 898

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcacaaggtatatggggaggtcagaggacaccctcaagtgccagtcctaagacaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcacaaggtatatggggaggtcagaggacaccctcaagtgccagtcctaagacaccc 260

                                                                       
Query: 61  tccaccttctggaacagagtcttttactgtcctcttccccatatagacaggcctagctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaccttctggaacagagtcttttactgtcctcttccccatatagacaggcctagctga 320

                                                                       
Query: 121 ctcgcaagcttctaagcatacacctgtctctgcctcctgtgtcaccatcaatagagttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgcaagcttctaagcatacacctgtctctgcctcctgtgtcaccatcaatagagttac 380

                                                                       
Query: 181 aggcatgcagagccacacacagctttttatatcagttctggaggcctgagcattctcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcatgcagagccacacacagctttttatatcagttctggaggcctgagcattctcacg 440

                                                                       
Query: 241 cttgcacaacttctgctttttaccaactgagccatctccctactggccaaccctgatttg 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcacaacacctgctttttaccaactgagccatctccctactggccaaccctgatttg 500

                                                                       
Query: 301 ttttaactcaactgtttccaaagtgtgaactttactgatggcaactccatgttataatgt 360
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tttcaactcaactgtttccaaagtgtgaactttactgattgcaactccatgttataatgt 560

                                                                       
Query: 361 caaatgtttggacacccctcggagggaggtgtttatggcaagatgctcgcaccgaggtta 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 caaatgtttggacacccctcggagggaggtgtttatggcaagatgctcacaccgaggtta 620

                                                                       
Query: 421 cttacgactgtacaaagaagagccatgagtactttggaactgacttcccaagcagacttt 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 cttacgactgtacaaagaagagccatgagtactctggaactgacttcccaagcagacttt 680

                             
Query: 481 tgcaccctccagacattc 498
           ||||||||||||||||||
Sbjct: 681 tgcaccctccagacattc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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