BAC Information

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BAC

Clone NameMSMg01-474D05
Chromosome12 (Build37)
Map Location 59,147,460 - 59,147,691
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474D05.T7 (MSMg01no474_d05.b1)MSMg01-474D05.TJ (MSMg01no474_d05.g1)
ACCAG556318AG556319
length751665
length of high quality
(start - end)
273 (49 - 321)234 (91 - 324)
definitionCHROMAT_FILE: MSMg01no474_d05.b1 PHD_FILE: MSMg01no474_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005CHROMAT_FILE: MSMg01no474_d05.g1 PHD_FILE: MSMg01no474_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCC
GCGGAATTCCTTCTTTATTTCCTCTACCATCATCATGAGATATGCTTTTA
AATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAA
GTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGT
AGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTG
TTATAGTTGTCTTTGTTAAAGATTGTTCCTCTGTTGATTTTGTTACCCTC
TATCAGCAGGCGTGGGAGACTATTTCTCTTTCTCTGAGTTTCAGTGGTCA
GAGCAGTCTCTGTATGTAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTT
ATCTGGTGGTTGGAACCTCCTCCTGGGCTGAACGTGGATGCCCCAAAATT
AGGATCTTTTCCCATAAACTTGTGGTTTGTTTTGGGCCAGGAAAAGTTGG
CCCCACTTGTCCTTGAATTCCCAAATATTTTCCCCCCCCTCCCATACCTC
TTTGGGGGTTCCTTTGCTTTGTTAAATCTGGGTTGTTTTTGTCTTTCTAT
ATTTAAAAAGTTCGCCTCTTCCCATTACTTCTCGTGATTTCTTTTTTCCC
TTTCCTCTTAAATATTTTGCGTTCTTCTGTTTTTTCCTCTATTTCCCTTC
CCTTTGTTTTTTTTTCTTCTCTCTTCGTTTCTCTCTCGTCTCCTAACATC
C
NCTTTTACCCTNNNCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAACATC
CCTGGTGATGCACTGGATTGGGCTACAGCAACGTAAAGCAATAGAAGACC
AAAAGAAGTGAACTCCAACTCCTACATCAGATTTGAAACAGAAATATTTA
AACAAAACTTAAGAGTTCTCCATGAAAACATTAGAGATTACAGAAATCCC
CATTCATGTAAGTTTCAGAAGAGAAATTGGCTGTTTATTTGGGCAAATGA
AGTAAGGAGACATGGGCTTCACTTCTCATGGATATCCTTTTTTACCTGGG
AGACCGGGTTTTCAAGAAGTATTAATAAAAAATATTGCTATTCCAAATTA
TGAACTTAAAAGGGTCATAACAGCTTAAAACTTCTAAGGGGTCAATGAAG
CCTTCTGGGCTCCCAGGAAAAGAAGGTTATTGCAACTATTGGGAAAAATC
TTAACTTTTCAGGGGGATAAAAAAAAAACCCCAAAGGGAAAAAACCCCCC
CTTCTCAAAAAATTCTTAACCCAATTTCATAAGGGGTGGCTTCGAGGGAA
ATCCCCCAAAGTCCAACTTTTCCACACTTAATAAAACCTTAGGGGAAAAA
AATTATTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_d05.g1 MSMg01no474_d05.g1 CHROMAT_FILE:
MSMg01no474_d05.g1 PHD_FILE: MSMg01no474_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:34 2005
         (234 letters)



>mm_chr12_59147260_59147891
          Length = 632

 Score =  398 bits (206), Expect = e-115
 Identities = 227/234 (97%), Gaps = 2/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaacatccctggtgatgcactggattgggctacagcaacgtaaagcaatagaagacc 60
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 432 cagaaacatccct-gtgatgcact-gattgggctacagcaacgtaaagcaatagaagacc 375

                                                                       
Query: 61  aaaagaagtgaactccaactcctacatcagatttgaaacagaaatatttaaacaaaactt 120
           || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagagaagcgaactccgactcctacatcagatttgaaacagaaatatttaaacaaaactt 315

                                                                       
Query: 121 aagagttctccatgaaaacattagagattacagaaatccccattcatgtaagtttcagaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 314 aagagttctccatgaaaacattagagattacagaaatccgcattcatgtaagtttcagaa 255

                                                                 
Query: 181 gagaaattggctgtttatttgggcaaatgaagtaaggagacatgggcttcactt 234
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 gagaaattggctgtttatttggtcaaatgaagtaaggagacatgggcttcactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space:   140175
Effective search space used:   140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)