BAC Information

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BAC

Clone NameMSMg01-475K18
Chromosome12 (Build37)
Map Location 92,665,985 - 92,666,248
singlet/doubletsinglet
Overlap geneTshr
Upstream geneLOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik
Downstream geneGtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475K18.T7 (MSMg01no475_k18.b1)MSMg01-475K18.TJ (MSMg01no475_k18.g1)
ACCAG557443AG557444
length775772
length of high quality
(start - end)
271 (44 - 314)429 (76 - 504)
definitionCHROMAT_FILE: MSMg01no475_k18.b1 PHD_FILE: MSMg01no475_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:32 2005CHROMAT_FILE: MSMg01no475_k18.g1 PHD_FILE: MSMg01no475_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATCATTATCCTTGCAAACCCACACTTTGGTTCTCCTCTGATACTATTGCA
TGAACTTTTTGGGGTTTGTTTGGTTTGGTTGTTTAGTGGTCTCTGAGGTT
AAAATAATGAGTCTCTCATTTGTTACATTTTTCTTTCCAAAACCAATTTG
TGCTTTATTATTTAAAAAAAGACGTTACTACACTCATTAACTTTGAGTCA
CTTTAAGCTCATTTTTTAACTTTTCCAGTACCCACCAAACCTGTAATTCT
TGCATCAATATTGGCTATTCTTATTGTCCTTTTTCACCTTATGACACCCA
CCAACTTGAATTATTTCACCACTACCTGCTGCCCACAATGTATATTTAAG
GATCTTCCGATGAATCACCAATTTGTCTTGTTCAGCTGCTGCCTCTGCAA
TGCTAGTATTTCAACCACCCCGAATTCTCCCATATACATCTCGCCATTTC
CCATTTACCTGCTCCCACTCATTGCTCTCCCCCCTTTGCCTCCCACATTC
TTTACTCCCCCATGCACTCGTCCTCCAATTTTCATTACACTTACTTTCCC
TCATACCCCCATCTCCCCCATTTTCTAACTTCCAATCCCCCCACCCCTTT
TCCCCACCCTCCCTTTCTCTCTTTTTTCCCCCTCCATTCTCTCCACCAAA
CACTCTACTCCCTCGAAAACATCTAATTTACCTATTCCATTTCCCCTTAT
TTATTTCTTCTTACTTTTTCTTTTG
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATGAAAGGTGAGAACTGGCTCCC
ATGAATTGTATTCTGATCTGGACACACACACACACACACACACACACACA
CACACACCCAAGTAAATAGATAAACTGGAGAGATGGTTTCATTCTGAGCA
TTCACGAGGTAGAAGCAGAAAGATCTCTGTGAGTCTGAGGCCAGCCTGAT
CTATATAGGATGTTTCAGGACAGCCATAGCTACATAATGAGGCCCTGTAT
ATAGATAAATAGGTATAATATTGTAACTCATAATGAAAGAGAATGAGGGT
CAGCAAGGTGGCTCAGTGGGCAGAGACACTTCTGCAGAGCCCGACAACCT
GAGTTCAATACAGAACCCACATAGAAGAGAATCTGCTCCTACAAGTTGGT
CTCTGACCTCCCTGAGTGACCCTTACACAAAAATAAATAGAATTTTAATT
AAAAAGCATGTAATTATTTTATTGCTGGACTTGACCCTGGGTTAAACCCC
CCCAACCTAGAAATTATACTCCTGCCAAATGTTTTCCCCTCGCAATTCAA
CCGCGCATGCACCCCCTCTCTGTTTTTGTCTTCCGTTCCCCCCCCCCTCT
TTTCCCCTCCCTCTTTCCTTTTTCCCCCCTCCCTTCCTTCTTTTCCCCTC
TTCTCTTTTTTTATCCTTCTCCCCTTCCCCTTTTTTTTTCCCCCTCCCTA
TTTTTTTCCCCTCTTTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_k18.b1 MSMg01no475_k18.b1 CHROMAT_FILE:
MSMg01no475_k18.b1 PHD_FILE: MSMg01no475_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:32 2005
         (271 letters)



>mm_chr12_92665777_92666448
          Length = 672

 Score =  456 bits (236), Expect = e-133
 Identities = 257/264 (97%), Gaps = 1/264 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcattatccttgca-aacccacactttggttctcctctgatactattgcatgaacttttt 67
           |||||||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 472 tcattatccttgtagaacccaccctttggttctcctctgatgctattgcatgaacttttt 413

                                                                       
Query: 68  ggggtttgtttggtttggttgtttagtggtctctgaggttaaaataatgagtctctcatt 127
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 ggggtttgtttggtttggttgtttagtggtctctgaggttaaaacaatgagtctctcatt 353

                                                                       
Query: 128 tgttacatttttctttccaaaaccaatttgtgctttattatttaaaaaaagacgttacta 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgttacatttttctttccaaaaccaatttgtgctttattatttaaaaaaagacgttacta 293

                                                                       
Query: 188 cactcattaactttgagtcactttaagctcattttttaacttttccagtacccaccaaac 247
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 292 cactcattaactttgagtcactggaagctcattttttaacttttccagtacccaccaaac 233

                                   
Query: 248 ctgtaattcttgcatcaatattgg 271
           ||||||||||||||||||||||||
Sbjct: 232 ctgtaattcttgcatcaatattgg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space:   173706
Effective search space used:   173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)