Query= MSMg01no475_m07.b1 MSMg01no475_m07.b1 CHROMAT_FILE:
MSMg01no475_m07.b1 PHD_FILE: MSMg01no475_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:39 2005
(274 letters)
>mm_chr12_55387844_55388518
Length = 675
Score = 478 bits (247), Expect = e-139
Identities = 265/273 (97%), Gaps = 5/273 (1%)
Strand = Plus / Minus
Query: 5 ggaattcctagatatac---ctccctgccagctggcccaagatttgttccaatgaggatg 61
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaattcctag--atacaatctccctgccagctggcccaagatttgttccaatgaggatg 418
Query: 62 acactatagcacaaggctgaatcagtgacagtccctttgttccgtctcccagactcctgc 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 417 acactatagcacaaggctgaatcagtgacagtccctttgttctgtctcccagactcctgc 358
Query: 122 gtgccggtgtacagacatgtccagcttggcaggcagctgacatctgaaggattcaggttg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtgccggtgtacagacatgtccagcttggcaggcagctgacatctgaaggattcaggttg 298
Query: 182 ttatcagacggacactcactaaacagtgtccctcccggcctctgcggggcatgcagcagt 241
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 297 ttatcagacggacactcactaaacagtatccctcccggcctctgcggggcatgcagccgt 238
Query: 242 gcacgtaggcctgcatacctcctatctctgccc 274
|||||||||||||||||||||||||||||||||
Sbjct: 237 gcacgtaggcctgcatacctcctatctctgccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space: 176490
Effective search space used: 176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_m07.g1 MSMg01no475_m07.g1 CHROMAT_FILE:
MSMg01no475_m07.g1 PHD_FILE: MSMg01no475_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:39 2005
(468 letters)
>mm_chr12_55374973_55375843
Length = 871
Score = 890 bits (460), Expect = 0.0
Identities = 467/471 (99%), Gaps = 3/471 (0%)
Strand = Plus / Plus
Query: 1 tcttgggggctgtttctgtaaatatcatattttttgtttatttttgagacatggtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgggggctgtttctgtaaatatcatattttttgtttatttttgagacatggtctctc 260
Query: 61 tatgtggccccagttgtcctggaactcattatgtacatcaggctggcctggaaatcacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtggccccagttgtcctggaactcattatgtacatcaggctggcctggaaatcacag 320
Query: 121 agatcctcctgcctctgcctcttaagtgctaggattaaaggcatgcaccaccaggccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcctcctgcctctgcctcttaagtgctaggattaaaggcatgcaccaccaggccaag 380
Query: 181 gtgttaacatcagttttaaaacaaataatagattactaaaaaaaaaaaaaa---gtattt 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gtgttaacatcagttttaaaacaaataatagattactaaaaaaaaaaaaaaaaagtattt 440
Query: 238 ctgtaaacatattttatatggaagtagatatttataagatattttgctttcaatatttta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaaacatattttatatggaagtagatatttataagatattttgctttcaatatttta 500
Query: 298 atcagcatatatccattgtacaaaataatggatttcattatgatattttcatacatacat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagcatatatccattgtacaaaataatggatttcattatgatattttcatacatacat 560
Query: 358 gtaatatacttgattatattcatactccctcccattactttctcttgtctctctgaatta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaatatacttgattatattcatactccctcccattactttctcttgtctctctgaatta 620
Query: 418 attatttttaaatattcttanaaagaaaaacagctctgatgatctgaattt 468
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 attatttttaaatattcttagaaagaaaaacagctctgatgatctgaattt 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 871
Length adjustment: 10
Effective length of query: 458
Effective length of database: 861
Effective search space: 394338
Effective search space used: 394338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
