BAC Information

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BAC

Clone NameMSMg01-479E21
Chromosome12 (Build37)
Map Location 103,991,862 - 103,992,171
singlet/doubletsinglet
Overlap geneMoap1
Upstream geneFbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, D230037D09Rik
Downstream gene5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479E21.T7 (MSMg01no479_e21.b1)MSMg01-479E21.TJ (MSMg01no479_e21.g1)
ACCAG560217AG560218
length787781
length of high quality
(start - end)		525 (70 - 594)579 (71 - 649)
definitionCHROMAT_FILE: MSMg01no479_e21.b1 PHD_FILE: MSMg01no479_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:15 2005CHROMAT_FILE: MSMg01no479_e21.g1 PHD_FILE: MSMg01no479_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAAT
TAAAGTTTTTCGCCAACTTGTGTGCTGCATGTCAAGACTTTGCCTCAAAA
AAAAAAGCCAAGATAGCAGAGCGCTGCCATTTCATCACCTGCTGGAACTT
ACAGAAGACCTGTGCTCTAGTTGGGGAACTCATTTCTTTTGTTTGATTGG
AACAAGTTCATCACAGAGCAAACTTCCTTGTTTCTAACAAAGAAAAGTAC
AACAAAAGTTTGGGAGTGAACTCTTTTGTTTTCTCATCCTAAAATAAAAT
GGAACCATTCATAGTGGATGATATCTAAATTGGCAAATGAATTTTTATGT
TTGTTTTTCTCCTTTAAAATGATCGTTGAATCAAATGGTGTGTGTCTACA
TCTTTCAGTGTTTATAAAAGCTGTTTATCATAGTTCATAGGCAATTAATA
TTTAAAAGAATCGATAAGAGAAATATGATTTGTGTGTGTGTATATACGTC
TGTACAAGTATAGATGTGAGGTTCAAATCAATAAAATACATTGATTGTAA
CTTACATATTTTCTGTAGCCTCTTTTTTTTTAATTTTATTCAAAAGGGGA
CTGTTGAATAGTTCCTAAAATATATTGTATGTGTTCCTTTTCTGCTGTTT
ATCGGNGGAACTAGAGTGGGGTTTTTTGATTTAAGNGCATCTTTCCTGAT
CCTGACACTTGAAATGCAAATATTCCTAATGAGATAAAAAAAACCTTTAA
ATAAACCTGGTTGCTTTGAAGCTGCGCCTCGCTATTA

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTAAATTAAATACCTAGAAGTGACTGTAA
CTTTGGTTTTTTTCAAATGCCTATTTTTTCAATAAAGATTTATTTATTTT
ATGTGCACTGTAGCTGTCTTCAGACACACCAAAAGAGGGCATTGGATCCA
CATTATGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCAG
GACCTCTTGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAG
CCCCTCAAATGTCCGCTTTTTGTTGTTGTTGTTGTTGTTGTCTTTTTTTG
TTGATGTTGTTGTTGTTTTTCAAGACAGAGTTTTTCTGTATAGCCCTGGC
TGTCCTGGAACTCTTTTAATGATGGTTCTTAAACACTTTAAACCTCCCTT
GTAGCCCACTGCCCTCCAGAGGTAAAAGAAAGGATACAGGGGAAGTGGAC
CTGTTTAGAAGGGTTCTTTGGAGCAACTCCTGTCTGTGTTGTCTGGAAAT
CGGCAGTTCAGTTCACAGGTCAGCAGCGGCAGCTCCATCCACTCACAAAC
ACTTCACAGACACACCAGTAGTCCAGTTCAGTAGAGTTGGGATAGCAAGC
ACGAATCAGCATCAGTGGTACGGTCTAACAGAGACAGGCAGGTCTCTGGC
TTGGCACAGTCCACATGATGTGACCCCAGGGATCCTTCAATTTTTCTGCT
GCGCCTTTTTCACAGAATGAATATTACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_e21.b1 MSMg01no479_e21.b1 CHROMAT_FILE:
MSMg01no479_e21.b1 PHD_FILE: MSMg01no479_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:15 2005
         (525 letters)



>mm_chr12_103991662_103992586
          Length = 925

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtgctgcatgtcaagactttgcctcaaaaaaaaaagccaagatagcagagcgctgcca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 510 gtgtgctgcatgtcaagactttgcctcaaaacaaaaagccaagatagcagagcgctgcca 451

                                                                       
Query: 61  tttcatcacctgctggaacttacagaagacctgtgctctagttggggaactcatttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttcatcacctgctggaacttacagaagacctgtgctctagttggggaactcatttcttt 391

                                                                       
Query: 121 tgtttgattggaacaagttcatcacagagcaaacttccttgtttctaacaaagaaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgtttgattggaacaagttcatcacagagcaaacttccttgtttctaacaaagaaaagta 331

                                                                       
Query: 181 caacaaaagtttgggagtgaactcttttgttttctcatcctaaaataaaatggaaccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caacaaaagtttgggagtgaactcttttgttttctcatcctaaaataaaatggaaccatt 271

                                                                       
Query: 241 catagtggatgatatctaaattggcaaatgaatttttatgtttgtttttctcctttaaaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 catagtggatgaaatctaaattggcaaatgaatttttatgtttgtttttctcctttaaaa 211

                     
Query: 301 tgatcgttga 310
           ||||||||||
Sbjct: 210 tgatcgttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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