BAC Information

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BAC

Clone NameMSMg01-479L07
Chromosome12 (Build37)
Map Location 17,385,475 - 17,385,700
singlet/doubletsinglet
Overlap geneNol10
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2
Downstream geneLOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479L07.T7 (MSMg01no479_l07.b1)MSMg01-479L07.TJ (MSMg01no479_l07.g1)
ACCAG560522AG560523
length748773
length of high quality
(start - end)
226 (425 - 650)---
definitionCHROMAT_FILE: MSMg01no479_l07.b1 PHD_FILE: MSMg01no479_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:48 2005CHROMAT_FILE: MSMg01no479_l07.g1 PHD_FILE: MSMg01no479_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGAGATCCGCG
GAATTCTTTTTCTACTTAAAAGGGCGGGATTTAGACTACTTAATGGTTTA
TTTGATAACATAAGAAGTCTTTCCTGTTTTGAGTGGAATTTTTATTCTCC
AAATTATATGGGGCTGGTGAGTTTATTTTGAAGGGTGCCTTGCTTGCTGA
GATCATGTACAAGCTTATAAAGGATCCTGAATTACCTGTAAAGGGTTGGG
GATATGTCAACTGATATTGTGTGTAGTCATGAGAGGGTTGGCTGTAGAAT
ATCTTGCCACCTTGAATGGGCTACTTAAAACTTTAGAAAACTATAGTTAA
CTAAAATTAATTTCTCTAGTGGTTCATTCTTTTAAAACTCCCTAAAATGA
TCATGGCATTCTAACCCCCCCCTAGTGACATATGGGTCTTAAAAATATTT
TATGTGTGTGAATGTTTTGCCAAAATGTATCTATGTGCACAACATGTACA
GATCATTGTGAACCATCAGGTGTGTGCCAGGAACTGAACCTGGCTCCTCA
CAAGAGCAATAAGTGCTTTTAGCCACTGAACCATCTCTTTGACCCTGATA
TGTGGGTCTTTTGAGGTAAGTTCTATATTACACTCCTATAATCATTTCAG
TCTGCATTTTGCTGTGAAGTTTTAATGCACAAATTCTGGTGCTGGACCTT
TTGGTTCCTTGATTCCTGATTTCAGGAGGGGAGCCTTTCTCTCCATTG
NCCCCGATGCTAGTGNGNAGGCCTGGNGGNCGCCTGGTCGNCACCTGGGG
NGNGACACNANAGAATTATCTGNCAGCCTGCGNGGNNGGGCAGCCANNNN
GGGAAAGGGGAGCACACAGAAAGTGCTCGCTNGNGNGNGNGNGGGGGGGG
GGAAGCAAAGGCNCCAGAGGGCAGAGGAGGCCCNCNGGCCGNGCACNCAA
AGGCCCACCGAGGGAGGAAGNGGCAGAGAGCAAAGCCGGGNCACCNCNCA
GGCCCCTTTTTTATGGTGAACCTCACCACCTTCCTTGGACAGGGTCACCT
GAGGATCCGGGACCCGCAAGGAATTTTTTTTTTTCCACNAGAGAGAGACA
CCCCAGCCCNCGACAGACCCCCACCCCAACGCCGCNAGGCACCAAAAGAG
CCCAGCCAGGAGAANAAAGCCCCCCCCCCTTAAGAGACACNCAAGACCAG
NGAGCAAAGGACCCACCGAAAGAGCCCCGCCCAACAGCCNCACCGGCCCC
AACGGACACAGCCAGACCCCCAGAGAGCCACGCCCAAAGCCCCACACAAA
CACCGCAACAGGCCCCCCCCACCACAAACCGCCACCAAGGACCAAGCCCA
CCCCCCNCAGCAACCACACCAACCAACCACGCCACCCCCCCCACCACAGC
AAACCACGCCCACATTCTCCTTTTTTCCCCGCTCGCTAACTCAATCCATT
TCCCCCCCCTTTTTTTACCCATTCTCCCCACCTCCCCATTTTTTATTCAA
TCTTTTATCTCCTTTTGGATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_l07.b1 MSMg01no479_l07.b1 CHROMAT_FILE:
MSMg01no479_l07.b1 PHD_FILE: MSMg01no479_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:48 2005
         (226 letters)



>mm_chr12_17385275_17385900
          Length = 626

 Score =  437 bits (226), Expect = e-127
 Identities = 226/226 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgacatatgggtcttaaaaatattttatgtgtgtgaatgttttgccaaaatgtatctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgacatatgggtcttaaaaatattttatgtgtgtgaatgttttgccaaaatgtatctat 260

                                                                       
Query: 61  gtgcacaacatgtacagatcattgtgaaccatcaggtgtgtgccaggaactgaacctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcacaacatgtacagatcattgtgaaccatcaggtgtgtgccaggaactgaacctggc 320

                                                                       
Query: 121 tcctcacaagagcaataagtgcttttagccactgaaccatctctttgaccctgatatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcacaagagcaataagtgcttttagccactgaaccatctctttgaccctgatatgtg 380

                                                         
Query: 181 ggtcttttgaggtaagttctatattacactcctataatcatttcag 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcttttgaggtaagttctatattacactcctataatcatttcag 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)