Query= MSMg01no480_e20.b1 MSMg01no480_e20.b1 CHROMAT_FILE:
MSMg01no480_e20.b1 PHD_FILE: MSMg01no480_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:34 2005
(647 letters)
>mm_chr12_76803826_76804872
Length = 1047
Score = 1062 bits (549), Expect = 0.0
Identities = 635/689 (92%), Gaps = 46/689 (6%)
Strand = Plus / Plus
Query: 1 agcaagaatttgccttcagccctagccccagcctgactcagacaaatctgagtaaaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agcaagaatttgccttcagccctagccccagcctgactcagacaaatctgagtaaaagtc 244
Query: 61 agctagaaatctaagaatctccacaatatagtttgcaactaggggttagtcttcttaacg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agctagaaatctaagaatctccacaatatagtttgcaactaggggttagtcttcttaaca 304
Query: 121 ctcttcacaaagctagtacc-gaagcttttacaatcagaggccaaatcaatgaggccaga 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcttcacaaagctagtacccgaagcttttacaatcagaggccaaatcaatgaggccaga 364
Query: 180 ttaaaaagtctggaaatagccaggcagtgatggtgcatgcctttaatcccagcacttggg 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttaaaagtctggaaatagccaggcagtgatggtgcatgcctttaatcccagcacttggg 424
Query: 240 aggtttt-----gctagtgtctctctgtgagttcgaggtcaccctggtgtaccaagtgag 294
||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agg----caaaggcaagtgtctctctgtgagttcgaggtcaccctggtgtaccaagtgag 480
Query: 295 ttcaggacagccagggctgtgcagatagaccccgtcttgaaaa-aaaa--aaacaaaaca 351
||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct: 481 ttcagtacagccagggctgtgcagatagaccctgtcttgaaaacaaaacaaaacaaaaca 540
Query: 352 aaacaaaa-----------ctaaaaatctggaaatcaactaatattcctgtgagtagata 400
|||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 541 aaacaaaaacaaaataaaactaaaaatctggaaatcaactaatattcctgtgagttgata 600
Query: 401 aaggtgacatttcacatcagagggaaaatggattatgtgacaggccggtttgggaaattg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaggtgacatttcacatcagagggaaaatggattatgtgacaggccggtttgggaaattg 660
Query: 461 ggatcgt-------------ggggctggagagatggattgggtcttcc---------cag 498
||||||| |||||||||||||||||||||||||||| |||
Sbjct: 661 ggatcgtcggaaaaggctgaggggctggagagatggattgggtcttccagaaggacccag 720
Query: 499 cttcaattcctagcacacacatggcagctcacaatggttgtaactctagtcctagggcct 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 721 cttcaattcctagcacacacatggcagctcacaatggttgtaactctagtcctagggact 780
Query: 559 agtcaggcccacttctgacttccttaagcatcaggaatttagtgatccacatacacacat 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtcaggcccacttctgacttccttaagcatcaggaatttagtgatccacatacacacat 840
Query: 619 gcagacaacacacacacacacacacacac 647
||| |||||||||||||||||||||||||
Sbjct: 841 gcaaacaacacacacacacacacacacac 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_e20.g1 MSMg01no480_e20.g1 CHROMAT_FILE:
MSMg01no480_e20.g1 PHD_FILE: MSMg01no480_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:34 2005
(608 letters)
>mm_chr12_76979173_76980180
Length = 1008
Score = 1100 bits (569), Expect = 0.0
Identities = 599/609 (98%), Gaps = 2/609 (0%)
Strand = Plus / Minus
Query: 1 ggatatagctcaatggcaagacaactgcctagcacaggagccttgaactcaatgcccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 ggatatagctcaatggcaagacaactgcctagcacaggagccttgaactcaatgcccagc 897
Query: 61 aaaagaacagaaagaacatgtgagccgggcagtagtgcgcccttctatagtctcagctac 120
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 896 aaaagaacagaaagaacacgtgagccaggcagtagtgcgcccttctatagtctcagctac 837
Query: 121 ttggaaactaaggcaggagaatcacttaggtctgggagttcaaaacctgactggttaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ttggaaactaaggcaggagaatcacttaggtctgggagttcaaaacctgactggttaaca 777
Query: 181 gagagagagaaaagtaaaaaaaaaaaacctcacctc-aaataaatggtgctctaagagtg 239
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 776 gagagagagaaaagt-aaaaaaaaaaacctcacctcaaaataaatggtgctctaagagtg 718
Query: 240 tgctgttttggaggctatgattttaaagcaataggtgccataggcattcctcatcgtcac 299
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 717 tgctgttctggaggctatgatttcaaaacaataggtgccataggcattcctcatcgtcac 658
Query: 300 atggaacaagtttagggtggtgcctggcacccgtcactcaatacaaacatcatgctgtta 359
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 acagaacaagtttagggtggtgcctggcacccgtcactcaatacaaacatcatgctgtta 598
Query: 360 ttatgtcatttgatgaaagaagtgctatcactctaaatatttttacaggattgtccagct 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttatgtcatttgatgaaaaaagtgctatcactctaaatatttttacaggattgtccagct 538
Query: 420 ccttctcaggtgccttttttcttgttccaggaaaaagtgacagatataccagggcaccaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ccttctcaggtgccttttttcttgttccaggaaaaagtgacagatataccagggcaccaa 478
Query: 480 tgtgagagcactctcttataaaaagacattcatgaccttctctgggtcatcacaatgtcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtgagagcactctcttataaaaagacattcatgaccttctctgggtcatcacaatgtcc 418
Query: 540 catttttagctggtatttatctgttatcaacagggtctcacagagcccaagctggccttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 catttttagctggtatttatctgttatcaacagggtctcacagagcccaagctggccttg 358
Query: 600 aactcagta 608
|||||||||
Sbjct: 357 aactcagta 349
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
