BAC Information

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BAC

Clone NameMSMg01-480O09
Chromosome12 (Build37)
Map Location 81,922,140 - 81,922,461
singlet/doubletsinglet
Overlap gene4933426M11Rik
Upstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O09.T7 (MSMg01no480_o09.b1)MSMg01-480O09.TJ (MSMg01no480_o09.g1)
ACCAG561430AG561431
length723720
length of high quality
(start - end)
323 (317 - 639)79 (164 - 242)
definitionCHROMAT_FILE: MSMg01no480_o09.b1 PHD_FILE: MSMg01no480_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:21 2005CHROMAT_FILE: MSMg01no480_o09.g1 PHD_FILE: MSMg01no480_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAAATTTGCGGCGCGAAAAGAANCACATTTCCTACGAGCGGTGGAANC
ANAGCCTTTCANCACGAGGGGGAAGNANNNCCNCNGAAAAAGCNNCAAAG
GCNCNANACTTACCCCACAAAGAAGCGANAAAGCNATCCNAGCAGCCCTT
CTGCCTTCATCTTCGAAGACCAAACTCTATCTATCTCCCTCTGCAATGCA
GTAAACTTAAGAGTCTACTTTCCATTTAGAGCTTAATCAATCTTTTAGCA
CATTTGTACCCATCATCTAGCACACAGTGTTCCTAATGCACTTTCCAAAA
ATAACTTTTTTTATTTAAGGAGAGGGAAAAAAAATCAAAAAGCCAACCAT
TCCCAGGAGTCAACACACCAGGAACACTGTAGCACTGTAGTAGCCTAGGA
AGAGAGAAAAAAATGTAGGAGAAATGAGGAAAAAAGGAGAACAAAGCAAA
AATGACTGTGACAGGAAAACAAGAGAAAGCAAGGAACTCAGCCATAAATG
TCTAATCTGTAGCCAGGAAGCCACTTTTTTAAGGCAGAGCTTTACCATGG
ACTGTTAGGCCAAACTACAACAGATACTTCACGACCTTTGCTTCTGTTTC
CTTGCCAGTGGACAGAAAATGGTTCAGCTAAGTATCTCTCATGATCTGCA
CTGCAGACCAGGGCAGATCTCTGGTCCACTTGGATAGGATTTTTTAGTAT
TATTATTTTTAATCGGCTGGGCT
ACCATGAAGTGGGAGGCCTGGGGGCGCCTGTTTCTTACCTGAGGTGAANN
ANAGAATTAACGNGACCGCGGTAGNTNCATCCCCAAGATCAGTAGTAGAG
TAAACCCTTGCTTCACCCGTTCTATTCCTGAAAGGACTAACTTCCCCAGA
GGAAAGATGAGGCATGAGGTAGGCCTCAAAGAGACTCTGAAGGGAAGGCA
TTGATGAAGGTGGAGAAAGCCTATGGTGGAAAGGGTGGTGATTTTTTTCG
GGGAGGGGAAATAGGGCCTTTAGCCAGAGAGAAGGAAGGCGTCACCTTGG
CCTGCGTTTTTTTTTTTTCNAAAACCCANCGCACCCGCGCCCCNAGGAAT
CTTATGACACACCAAGCCACCGAAGCGGACCCCCAAGCACGGACGCCGAG
CANACAGGAACGCCCGCGCACCACACGCAANCCGGGAGGCAACGGAGGCC
AAAAGAAGNCGCGGGGNCCCCAGGAACNGGAGNNACAAAGCGGCAAGAGC
CACCAGGNCGCCGGGAAAAGAACCCGGGNCCCCCGAAAGAGCAGNCAGAG
CCCCGAACGGCAGAGCCACCAGAACCACAACACCGGNCAAAAAACACAGA
CGACACGGAACAGGACCCCCCGAAACGCCCGGGGGAAAATTTTTTTGGTA
GCGTTTTGCCTACCACATGCAAAGGCCAAAATTTGATTCCCTAGCACTGG
ACAACCAAAATCCTTAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o09.b1 MSMg01no480_o09.b1 CHROMAT_FILE:
MSMg01no480_o09.b1 PHD_FILE: MSMg01no480_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:21 2005
         (323 letters)



>mm_chr12_81921940_81922661
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggagagggaaaaaaaatcaaaaagccaaccattcccaggagtcaacacaccaggaaca 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 522 aaggagagggaaaaaaaatcaaaaagccaacca-ccccaggagtcaacacaccaggaaca 464

                                                                       
Query: 61  ctgtagcactgtagtagcctaggaagagagaaaaaaatgtaggagaaatgaggaaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctgtagcactgtagtagcctaggaagagagaaaaaaatgtaggagaaatgaggaaaaaag 404

                                                                       
Query: 121 gagaacaaagcaaaaatgactgtgacaggaaaacaagagaaagcaaggaactcagccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gagaacaaagcaaaaatgactgtgacaggaaaacaagagaaagcaaggaactcagccata 344

                                                                       
Query: 181 aatgtctaatctgtagccaggaagccacttttttaaggcagagctttaccatggactgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatgtctaatctgtagccaggaagccacttttttaaggcagagctttaccatggactgtt 284

                                                                       
Query: 241 aggccaaactacaacagatacttcacgacctttgcttctgtttccttgccagtggacaga 300
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 283 aggccaaactacaacagaaacttcacgtcctttgcttctgtttccttgccagtggacaga 224

                                  
Query: 301 aaatggttcagctaagtatctct 323
           |||||||||||||||||||||||
Sbjct: 223 aaatggttcagctaagtatctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)