Query= MSMg01no481_h04.b1 MSMg01no481_h04.b1 CHROMAT_FILE:
MSMg01no481_h04.b1 PHD_FILE: MSMg01no481_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:05 2005
(430 letters)
>mm_chr12_108643661_108644492
Length = 832
Score = 429 bits (222), Expect = e-124
Identities = 301/344 (87%), Gaps = 32/344 (9%)
Strand = Plus / Minus
Query: 97 ggctcaaatcaggaaagccactggtctttgtatctccttaagtgtagctctatactcagg 156
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 832 ggctcaaatcaggaaagccactggtctttgtatccccttaagtgtagccctatactcagg 773
Query: 157 gacctcttggggtgtgtgtgtgcatgtgcttt--tgtgtgtgtgtgcatgtgtgtttgtg 214
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 772 gacctcttggggtgtgtgtgtgcatgtgcttttgtgtgtgtgtgtgcatgtgtgtttgtg 713
Query: 215 tgtgtatgtgcttttgtgtgtgtgtatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgca 274
|||||||| || ||||| |||||||||||||||||||||| |||||||
Sbjct: 712 tgtgtatg----ttcgtgtg----------tgtgtgtgtgtgtgtgtgtgtgcgtgtgca 667
Query: 275 tgtgtttttgtgtgtgtatgttcgtgtgtgtg----ttgacagttacttttaggtcaatg 330
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 666 tgtgcatttgtgtgtgtatgtttgtgtgtgtgtgtattgacagttacttttagatcaatg 607
Query: 331 --tctaaatttaaaatcattgcatcacataatatga-----tttcttttttcaaaaattt 383
|||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 606 tctctaaatttaaaatcattgcatcacataatatgacttcttttttttttt-----attt 552
Query: 384 gtctcaagtaaaagaaagaatgtgtatgctgctaccccaagttt 427
||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 551 gtctcaagtaaaagaaagaatgtgtatcctgctaccctaagttt 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 832
Length adjustment: 9
Effective length of query: 421
Effective length of database: 823
Effective search space: 346483
Effective search space used: 346483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_h04.g1 MSMg01no481_h04.g1 CHROMAT_FILE:
MSMg01no481_h04.g1 PHD_FILE: MSMg01no481_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:05 2005
(595 letters)
>mm_chr12_108462001_108462995
Length = 995
Score = 957 bits (495), Expect = 0.0
Identities = 583/645 (90%), Gaps = 55/645 (8%)
Strand = Plus / Plus
Query: 1 aggagctggagatgcctcagccttgaaccctcagcagctgcttgaccttccagcccttac 60
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 156 aggagctggagatgtctcagccttgaaccctcagcagctgcgtgaccttccagcccttac 215
Query: 61 aaatgcatctgtgcatggggagacagctcacttctctgataaatacttattcttattttg 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 216 aaatgcatctgtgcatggggagacagctcacttctctg----atacttattcttattttg 271
Query: 121 tatatatgagtgatatagccacatctgtatgtgtgtgccatatatacacttggtgccaaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgtatatgagtgatatagccacatctgtatgtgtgtgccatatatacacttggtgccaaa 331
Query: 181 acaaaacaaaaca-------aaacaaac----aaacaaaaacagaagacagttttggatc 229
||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 332 acaaaacaaaacaaacaaacaaacaaacaaaaaaacaaaaacagaagacagttttggatc 391
Query: 230 tcctggaatcagaattatagaaagttgtaagcctccatgtgaatgctaggtacctaaccc 289
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 392 tcctggaatcagaattatagaaagttgtaagcctccgtgtgaatgctaggtacctaaccc 451
Query: 290 aggccctctgcaagagcagccagtcttcttaacctgtgagccatttttcctcctca---- 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aggccctctgcaagagcagccagtcttcttaacctgtgagccatttttcctcctcagacc 511
Query: 346 ----------------------------------ggttctcccttcatgtaggacagcaa 371
|||||||| |||||||||||||||||
Sbjct: 512 cgagtttctctcacgttttccatggggattgtgtggttctccgttcatgtaggacagcaa 571
Query: 372 acacc-aggtggaatgggaaaagtgtgttaccgttggggaatgtgagtcactgtagcctt 430
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 572 ac-ccaaggtggaatgggaaaagtgtgttaccgttggggaatgtgagccactgtagcctt 630
Query: 431 acacaaagcatgtctttgatacctacctcagtttccccaaatataaactgaggggtttgg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acacaaagcatgtctttgatacctacctcagtttccccaaatataaactgaggggtttgg 690
Query: 491 agcagcacaccgtcctgtcgtgctattaggtggacatgtggggcacagcttgttcagtgg 550
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aacagcacaccgtcctgtcgtgctattaggtggacatgtggggcacagcttgttcagtgg 750
Query: 551 gaccagggtcctttcagagaccttagcatgacaaatgacacttaa 595
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaccagggtcctttcagagaccttagcatgacaaatgacacttaa 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
