BAC Information

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BAC

Clone NameMSMg01-482E10
Chromosome12 (Build37)
Map Location 9,472,032 - 9,472,616
singlet/doubletsinglet
Overlap geneLOC100042238
Upstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030
Downstream geneOsr1, LOC382567, Nt5c1b, Rdh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482E10.T7 (MSMg01no482_e10.b1)MSMg01-482E10.TJ (MSMg01no482_e10.g1)
ACCAG562480AG562481
length665729
length of high quality
(start - end)
422 (98 - 519)585 (74 - 658)
definitionCHROMAT_FILE: MSMg01no482_e10.b1 PHD_FILE: MSMg01no482_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:09 2005CHROMAT_FILE: MSMg01no482_e10.g1 PHD_FILE: MSMg01no482_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAGCTTCAAAAGAGGAGCCGCGGAATTCAAGGTTTCTACCTAAACGTG
ATAAAAGCAATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATCGGAG
AGAAGCCGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGGTGGCCA
CTTTCTCCCTACCTTTTCAACATAATACTTGAAGTATTAGCCAGAGCAAT
TCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCA
AAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGTTTTTTAA
AAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTTGGTGAAGTAG
CTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAG
AATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGT
CACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAACG
ATCTGTATGATAAAAACTTCCAGTCTCTGAAGAAAGAAATTAAAGAAGAT
CTCCGAAGACGGAAAGATCTCCCATGCTCATGGATTGGCACGAACAACAT
TGTAAAAATGGGCACCTTGCCCAAAGCAATCCACAGATTCCATGCAATCC
CCATCCAAATTCCAG
CGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGGCTGCTTGCAGTACATTCCAGAGC
TCAGTCACTATATATTTTTTGTTTCTTTTCTTTTTCATATTGTCTGCTCT
TTGGGATTATATTCATCACTTTGGCCTTCAGCTACAGGTGGGGACATTAT
TTTGGAAGCCCTTCCTTCTATTGTCTTTGTAACCTAGATGCATTGCCCAT
GACATTTTAGCTATTTAATAATTCTACTATTTCAACAAGCCCTCTCAGGG
GAGCAGTTTCAGCTCCCATCTATGCTTTCCATAGGATCCATGGAAGGCAC
AGGTGTGAGAAATCGAAGGCTTTCTCTCCTGGGGATCTCTCTTAAGCCAG
GTCTGTTTTTTTCCCTGTCATTGTTGTGTAACAAAATGGGTTTTAAGCTT
TGTAGATTAGTAATTCTTGAATATTCAGAAATGAAAATCCCCCTCAAAAC
ATAAAATGGCTCTCTAAATATGTTAATTCCATGCAATTTCTTGTTTCTTA
CCTTCTCTATTCACCATGACAACATCCCCTATAAACTTTGGATAGATTAT
TGTTATCAGATGTGAATAAGGAAAAGCCATCTTTCCCCAAATGAATAACA
GGAAGACAGCACCGTGCTTGGGCAGCCTGTCAAGGCTGTAAGGATATTCT
GAAGTTCTGCGGCTCACTCACCTGGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_e10.g1 MSMg01no482_e10.g1 CHROMAT_FILE:
MSMg01no482_e10.g1 PHD_FILE: MSMg01no482_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:09 2005
         (585 letters)



>mm_chr12_9471832_9472816
          Length = 985

 Score = 1116 bits (577), Expect = 0.0
 Identities = 583/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctgcttgcagtacattccagagctcagtcactatatattttttgtttcttttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggctgcttgcagtacattccagagctcagtcactatatattttttgtttcttttcttt 260

                                                                       
Query: 61  ttcatattgtctgctctttgggattatattcatcactttggccttcagctacaggtgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatattgtctgctctttgggattatattcatcactttggccttcagctacaggtgggg 320

                                                                       
Query: 121 acattattttggaagcccttccttctattgtctttgtaacctagatgcattgcccatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattattttggaagcccttccttctattgtctttgtaacctagatgcattgcccatgac 380

                                                                       
Query: 181 attttagctatttaataattctactatttcaacaagccctctcaggggagcagtttcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttagctatttaataattctactatttcaacaagccctctcaggggagcagtttcagc 440

                                                                       
Query: 241 tcccatctatgctttccataggatccatggaaggcacaggtgtgagaaatcgaaggcttt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccagctatgctttccataggatccatggaaggcacaggtgtgagaaatcgaaggcttt 500

                                                                       
Query: 301 ctctcctggggatctctcttaagccaggtctgtttttttccctgtcattgttgtgtaaca 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ctctcctggggatctctcttaagccaggtctgttttttcccctgtcattgttgtgtaaca 560

                                                                       
Query: 361 aaatgggttttaagctttgtagattagtaattcttgaatattcagaaatgaaaatccccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgggttttaagctttgtagattagtaattcttgaatattcagaaatgaaaatccccc 620

                                                                       
Query: 421 tcaaaacataaaatggctctctaaatatgttaattccatgcaatttcttgtttcttacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaaacataaaatggctctctaaatatgttaattccatgcaatttcttgtttcttacct 680

                                                                       
Query: 481 tctctattcaccatgacaacatcccctataaactttggatagattattgttatcagatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctctattcaccatgacaacatcccctataaactttggatagattattgttatcagatgt 740

                                                        
Query: 541 gaataaggaaaagccatctttccccaaatgaataacaggaagaca 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaataaggaaaagccatctttccccaaatgaataacaggaagaca 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)