Query= MSMg01no483_b06.b1 MSMg01no483_b06.b1 CHROMAT_FILE:
MSMg01no483_b06.b1 PHD_FILE: MSMg01no483_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:09 2005
(501 letters)
>mm_chr12_109610384_109611281
Length = 898
Score = 600 bits (310), Expect = e-175
Identities = 409/478 (85%), Gaps = 58/478 (12%)
Strand = Plus / Minus
Query: 33 gtctcctccgctgcaggctgcagccttagtctcgtttggtt---------ttgttgttgt 83
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 898 gtctcctccgctgcaggctgcagccttagtctcgtttggttttgttgttgttgttgttgt 839
Query: 84 tgttgtttgggaaaaggtctctctctctctctctctctctctctctctctctctctctct 143
||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgttgtttgggaaaaggtctctctctctctctctct------------------------ 803
Query: 144 ctctctctctctctctctctctctccattttgctttctgttgtttcgggtttttgagacg 203
| ||||||||||||||||||||||| ||||||||||||
Sbjct: 802 ---------------------t-tccattttgctttctgttgtttctggtttttgagaca 765
Query: 204 caatctctttgtgtagctgaggctggcctaaaacttgaaatcctcctgtctcagcctcct 263
|||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 764 caatctctctgtgtacctcaggctggcctaaagcttgaaatcctcctgtctcagcctcct 705
Query: 264 cagcaggacctgcttatattctcagatgaggctctgtgtcagacccatagaaggaagaca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cagcaggacctgcttatattctcagatgaggctctgtgtcagacccatagaaggaagaca 645
Query: 324 aagagcacggcactgcattttacagccataacaacgattccaacagcttgcacagggtct 383
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 644 aagagcacggcactgcattttacagccat---aacgattccaagagcttgcgcagggtct 588
Query: 384 cttgtcagagctgagccaggacaaagcaaaccagtactgaccccacctccagacaaagaa 443
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 587 cttgtcagagctgagccaggacaaagcaaaccagtactgaccccacccccagacaaagaa 528
Query: 444 aagaaaaagagtataagtcctctcctggccccaggcttcacataccatgtacactcag 501
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 527 gagaaaaagagtataagtcctctcctggccccaggcttcacataccatgcacactcag 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 898
Length adjustment: 10
Effective length of query: 491
Effective length of database: 888
Effective search space: 436008
Effective search space used: 436008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_b06.g1 MSMg01no483_b06.g1 CHROMAT_FILE:
MSMg01no483_b06.g1 PHD_FILE: MSMg01no483_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:09 2005
(257 letters)
>mm_chr12_109487694_109488349
Length = 656
Score = 468 bits (242), Expect = e-136
Identities = 251/254 (98%), Gaps = 2/254 (0%)
Strand = Plus / Plus
Query: 1 tttctgggcttcgtgccaacgccatgagctttgatctcaggcaaatcttcccgtcctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgggcttcgtgccaacgccatgagctttgatctcaggcaaatcttcccgtcctgga 260
Query: 61 ccaggaccctgacatctacactgtacgaacccttgaaccctctgctatcccacagcaggc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggaccctgacatctacactgtacgaacccttgaaccctctgctatcccacagcaggt 320
Query: 121 tgaagcacagagaactttgtgtgcatggatgagttaggagagcccagagccaagagaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagcacagagaactttgtgtgcatggatgagttaggagagcccagagccaagagaagt 380
Query: 181 ggaagactaaagagtccaggacctaaaggattcaggaaatgaaggggaagaggaggtggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagactaaagagtccaggacctaaaggattcaggaaatgaaggggaagaggaggtggg 440
Query: 241 gccgggg-gggggg 253
|| |||| ||||||
Sbjct: 441 gc-ggggtgggggg 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 656
Length adjustment: 9
Effective length of query: 248
Effective length of database: 647
Effective search space: 160456
Effective search space used: 160456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
