Query= MSMg01no485_d16.b1 MSMg01no485_d16.b1 CHROMAT_FILE:
MSMg01no485_d16.b1 PHD_FILE: MSMg01no485_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:06 2005
(619 letters)
>mm_chr12_5766611_5767629
Length = 1019
Score = 980 bits (507), Expect = 0.0
Identities = 537/547 (98%)
Strand = Plus / Minus
Query: 73 gcctttaattgcatttagccatctataccccttgatttccctacaatgaaaacataaaat 132
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1019 gcctttaattgcatttagccatctataccccttgatttccctacagtgaaaacataaaat 960
Query: 133 aaaatttttaaaaagttctttcaaagtctcttttccaaatactagcctttaaaagataca 192
||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 959 aaaatttaaaaaaaattctttcaaagtctcttttccaaatgctagcctttaaaagataca 900
Query: 193 gtcttggggctgtgggtatggcttagatagtagagtgtatcccttgcatgcaggaggctc 252
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 899 gtcttggggctgtgggtatggcttagttagtagagtgtatcccttgcatgcaggaggctc 840
Query: 253 tgggttctatccccagaaccatacacccaacctgccagtcccatctcatctctggatgag 312
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 taggttctatccccagaaccatacacccaacctgccagtcccatctcatctctggatgag 780
Query: 313 gagaggctccactgagcccctcagtggagcttcagtctttgatgcacctggttagatggt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gagaggctccactgagcccctcagtggagcttcagtctttgatgcacctggttagatggt 720
Query: 373 gtccagccctttcaactcctttcctaaagtcacaagccactgatgatgaacagaagaggg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtccagccctttcaactcctttcctaaagtcacaagccactgatgatgaacagaagaggg 660
Query: 433 agggagctgatactcttgagttcctcagatccttatttgcgttcttttccccaccctaag 492
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 659 agggagctgatactcttgagttcctcagatccttatttgcgctcttttccccaccctaag 600
Query: 493 ataaacacactcttgcaacaatgtgcctgcagtgttttgatggtgctttgagtcttacct 552
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 599 ataaacacactcttgcaacaatgtgtctgcagtgttttgatggtgctttgagtcttacct 540
Query: 553 gctagcgtctttgggtgtgctgcaccactggcacatgctttggaaagggcaggattcatc 612
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gatagcgtctttgggtgtgctgcaccactggcacatgctttggaaagggcaggattcatc 480
Query: 613 acactgt 619
|||||||
Sbjct: 479 acactgt 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_d16.g1 MSMg01no485_d16.g1 CHROMAT_FILE:
MSMg01no485_d16.g1 PHD_FILE: MSMg01no485_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:06 2005
(583 letters)
>mm_chr12_5655602_5656583
Length = 982
Score = 1089 bits (563), Expect = 0.0
Identities = 578/583 (99%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 1 tttgatttggaggtgagcatcataagtatttaacaaaaaaaatgtggcatcctctgccca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tttgatttggaggtgagcatcataagtatttaacaaaaaaa-tgtggcatcctctgccca 259
Query: 61 gtttccctttgtaacataaaattataggtcattaatactgtttagataattgatattggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtttccctttgtaacataaaattataggtcattaatactgtttagataattgatattggg 319
Query: 121 tttagagagatggctcagtggttaagagcactgactcttccagaggtcctgagttcaatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttagagagatggctcagtggttaagagcactgactcttccagaggtcctgagttcaatt 379
Query: 181 cccagcaaccacatggtggctcacaaccatctgtattgggatccaatgccctattctggt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 cccagcaaccacatggtggctcacaaccatctgtaatgggatccaatgccctattctggt 439
Query: 241 gtgtctgaagacattgacagtgtgctaacatatgaaaaataaatcttaaaaaaaagataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgtctgaagacattgacagtgtgctaacatatgaaaaataaatcttaaaaaaaagataa 499
Query: 301 ttgatatttttacaattcatcaaatttgttccaattttccaagttttacttgagtttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgatatttttacaattcatcaaatttgttccaattttccaagttttacttgagtttatt 559
Query: 361 tttgctttttaaatatgttttgttcaaatgtaaagtttgtatctgctgctataattaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgctttttaaatatgttttgttcaaatgtaaagtttgtatctgctgctataattaagg 619
Query: 421 catagaagaggtctactgaagtcaaggcccttgggtttccaatctgatatcccatctgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catagaagaggtctactgaagtcaaggcccttgggtttccaatctgatatcccatctgct 679
Query: 481 caaacccccccagaatcattaacctgctatccttttatgatatttagtcttttgtcatta 540
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 caaccccccccagaatcattaacctgctatccttttatgatattcagtcttttgtcatta 739
Query: 541 agcatgttcttatctgtgggttttgtagaaatgttctgtatta 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcatgttcttatctgtgggttttgtagaaatgttctgtatta 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space: 556956
Effective search space used: 556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
