BAC Information

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BAC

Clone NameMSMg01-485K08
Chromosome12 (Build37)
Map Location 10,224,573 - 10,224,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485K08.T7 (MSMg01no485_k08.b1)MSMg01-485K08.TJ (MSMg01no485_k08.g1)
ACCAG565041AG565042
length7601,282
length of high quality
(start - end)
423 (77 - 499)---
definitionCHROMAT_FILE: MSMg01no485_k08.b1 PHD_FILE: MSMg01no485_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:40 2005CHROMAT_FILE: MSMg01no485_k08.g1 PHD_FILE: MSMg01no485_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCC
GCGGAATTCTGCTATGCTTCACACGGTAATTCTGCAGAGCCAATGACTCT
TCAAACCCTATGTATATATCAGTTTAACTATAAGAAGGAAATCAATCAAT
CAATCAAAATTATATTATGAAGTTGAAGTCTGAACTGAGAATGGCTGATA
ACATTGTGTATTTTTACGGGCTAAGCATATATACATCTCCCTGTTTGATT
TTTATAATAATTAGGAACTGAGAATTGATTTTTACTACATACATGTCTCT
GAGAGGAAGAAACACGAGAAAGGAGAAAATAAGTATGCTGCTCACACTAA
CACAGCCAATAAAGACAACACTGAGCTCTTGACTCTAGCTGCATATATAT
CAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTT
GCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGG
AGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGCAATTGATTTTTATTACTT
TTTGCTATGTTCTTATTCCTCTCCCTTATTTTCCACCTTTTACCCCCCTC
CATTTTTTCTCCCACCTCTTTTTGCTTTGTCAATCTTCCTACTTTCCTTT
TCTCCTGTCTCGAGCTATCCTTAATTACCCCACCCCCTTCCTTTTTATTT
ATCATCCATCACCCCTCATTTTATGTCATCGCTTTTTGCTTTCATACTGT
GTTCCTATTT
ACCCCCCTCGCCATTNAGTNCAATTTATCTCCTTCCCGCGTTGTTCTTCC
TCCCCTCTTGTTCCCTTGTGGGTCGTCGGTGCTTTTACGTTTGGCGGGGA
CGGGGCCGCAGTGTTTATTCCGCCTGTCGGGTCAGCGGGGTCGCTGGTTG
CGCGGCTAGCGCGCNCGGCCTCTCGTGTTTGTGGGAGTGGCGGACTGGGG
AGGGGGAGGGTGATCGATTGTGGGTAGCGTTGTTGCCCGGATGGCTGTGT
TGTGTTCTGGGTGCGACGAGGCTGGCCGGTGTTAGTGAAGCGAGTCCATG
TTACTTGCCGGCGCCGGTGTGCGCGCCCCGCTGGGGGGCGCTGTTGGCCG
GGGTGACGGGGTGGGGTTGGGGCCGGGTGCGGTGTGTCTGTGTGGTGGGA
GACGTGTGCTTCGACGCAGCCGTGAGTCCGACCCCGATCGCCCGCATCGT
TTTATGGTGTCCCCCACGTGAGTAATTGGTCGCCCGGCGCCCCGCGTGTT
GTATGTTGGGGTGGTGTGTTGTGTGGCGCGGTTTTGTGAGGGGGTGCGGA
GCGACGCGAGATATTGCGGAGGAGTGCGGAGTGTGTTGTGCGTTATAGGG
TGGGCGACCGAGGGTGGGAGTCGCGCCGGGTTGAGTGATGTATGCGTGAG
CGCGTGAGCGAGAGCCAGGCCGGTGAGTGTCGCATAGCGGAGCAAGCGTC
GGCGGGAGCGTTGGACGCTATGATCACGCCTAGCTACTCCGTGCCGCCGG
CTGGATTGGTCGCGTACGTGTGTTTCGTTGTGGTGAGTGTGCCGATCTTG
TGGTGATATGCGCGCGCCGGTGTGCGTTGTGTCACTAGTAGAGGTTGTGC
GCCTCTGTGCGAGGCGACGTGCGTGTATCGAGGCGGCGGCGTGGGTAGTA
GAGTGCGTCGCGCGTGCGAATTATGTCCGCGCTTGTCTTTAGCTCGCTCA
TGTTGAAGATTAGTCCGCTGCGCGGCGCCGCGCTGGCTCTGTGTTCTGCG
ATATTGTCGGCGCATCCTGTGGGTATGAGTGCAGTCGCGCGCGCCTGCGG
CGGACCACCATAAGATATAGGGGCCGTGGTCGTGTGGGCCCCTATGCTTA
TGTGTATCGAGTAGGAGTGCGCCACCGAGCGCGCAGACTCGACTGGTGTA
GAGGCGGCCAGCCTCTATGGCCGCCGGCGCGCTCGTCTCCTGATTGTTCT
GCCCGCGCCTCGCCGTGTGGTTGTTCTGCNACGACTCGCCTCCTCGCTCA
CGTGGCCTCATTCGTTCGGTGTGCGCGCCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_k08.b1 MSMg01no485_k08.b1 CHROMAT_FILE:
MSMg01no485_k08.b1 PHD_FILE: MSMg01no485_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:40 2005
         (423 letters)



>mm_chr12_10224373_10225195
          Length = 823

 Score =  818 bits (423), Expect = 0.0
 Identities = 423/423 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattctgcagagccaatgactcttcaaaccctatgtatatatcagtttaactataagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taattctgcagagccaatgactcttcaaaccctatgtatatatcagtttaactataagaa 260

                                                                       
Query: 61  ggaaatcaatcaatcaatcaaaattatattatgaagttgaagtctgaactgagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaatcaatcaatcaatcaaaattatattatgaagttgaagtctgaactgagaatggct 320

                                                                       
Query: 121 gataacattgtgtatttttacgggctaagcatatatacatctccctgtttgatttttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataacattgtgtatttttacgggctaagcatatatacatctccctgtttgatttttata 380

                                                                       
Query: 181 ataattaggaactgagaattgatttttactacatacatgtctctgagaggaagaaacacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattaggaactgagaattgatttttactacatacatgtctctgagaggaagaaacacg 440

                                                                       
Query: 241 agaaaggagaaaataagtatgctgctcacactaacacagccaataaagacaacactgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaggagaaaataagtatgctgctcacactaacacagccaataaagacaacactgagc 500

                                                                       
Query: 301 tcttgactctagctgcatatatatcaaaagatggcctagtcggccatcactggaaagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttgactctagctgcatatatatcaaaagatggcctagtcggccatcactggaaagaga 560

                                                                       
Query: 361 ggcccattggacttgcaaactttatatgccccagtacaggggaacaccagggccaaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcccattggacttgcaaactttatatgccccagtacaggggaacaccagggccaaaaag 620

              
Query: 421 ggg 423
           |||
Sbjct: 621 ggg 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)