BAC Information

Click to search

BAC

Clone NameMSMg01-487P15
Chromosome12 (Build37)
Map Location 31,072,511 - 31,095,243
singlet/doubletdoublet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487P15.T7 (MSMg01no487_p15.b1)MSMg01-487P15.TJ (MSMg01no487_p15.g1)
ACCAG566811AG566812
length769771
length of high quality
(start - end)		722 (45 - 766)632 (77 - 708)
definitionCHROMAT_FILE: MSMg01no487_p15.b1 PHD_FILE: MSMg01no487_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:45 2005CHROMAT_FILE: MSMg01no487_p15.g1 PHD_FILE: MSMg01no487_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,072,511 - 31,073,229)(31,094,920 - 31,095,243)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGGAAGTCCGTGGGAAGGAAGATCAGAAGAGTAATACTTTAAAT
GTGCAGAATTAAACACAAAGCAATCACAAGAAAACAGGTCAAACACTTTA
AATTGTAATTTATTGTAAGTGTGTGATTTTCTTGAAACCTCCTAATGACA
GTGCTATGGAAATGCTTGAGGCACGGTGGTTTGCAGCTCCCACTTGTAGT
AAAAGAAAATGCTGGGTTTTAGTTAGAGATAAACAACCACATTACTGAAA
GGTGCTCTCCATGTTTTCTCCTTAAGTTTAGATTCTCCAGGTGCTCAGCT
GGACTTTAAAACTGTTAATTGGCTTGTTTTTACTTTGAAGATTCCCTACA
TTAGTACACACACATTTGCATTATTTTCACACACACCCCATTCCTGACTC
CATGCTTCCATGCTTCATGACCACTTCTTCTGTATATATAATTTATCCTT
CTGAGTCCAATTACTGGCAGTCTGTTACTTGCATTTAGTGATCTGTCATT
TGCATTCATTTGGGGTTGATCACTTAGGAAAAAAGAGGAACCAATTAAGC
CCAAATCCATTAGACGAAAAATTAACAAAATAATAGTAATAGCAAAGCAA
TGCAAAGAAACAATGAATCTAAGAACTTCTTTTAAAGCAATAGAAAGATT
TACAAAATCTTAGTTGAATTAACTGGAAGAGGAGACCCATTTTAATAAAA
TATATATGAACAGGGAAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGACCCAGACTCATTTGTTTTG
TTGAAGCTTTCCAACACTCAAGGACTACCAGCAAGTGAACATCCTGTGGA
TTGGAAAACCCAAGGTGCCTATCACCACAAAACAAGGAAAGAAACAGCGG
AGCTCTCACTGTTTCCCGGAAATAAGGGATAGTTTACTTTTGAGCCAGTT
TGAGTGACTATGGACCAGAAATACAACTTTAGGTTTCTCAAAATTCCATT
TTTAATGTGGAAGCAGTCTTGTGAAGTTTTACAGTTTTACAAAATGAAGA
AAGCCATAAATCAAGGCAAACTCAAATTACTTTGTTGGTTACATCACAGA
TGAAGGTAGTGCGAGATGGGGGAAAGCTTAACTTTAGGGCTAAGATGCTG
CCATCTAATGACATTTTTAGCTTTGGGGATTGGTGGATGCTAGCGGTATG
CTAAATTAATAGATCCCATAATAATTTTATCTACTCATCACAGGATATTA
GTTCCAATACAGAGACAGTCAAGGAATGGCTATTCAAGGAGCCAAAGCTA
GCCTAAGATATGGTGATTTGAGTCTGGACCTGTAACATTCCAACTCTCTA
TATCACGGCAGTTCTAATCAGATAATCAGTCATTATAGACACAGCCTCTT
TTCGGGAATTCTTGTTCACAAGCCTAATAGTCTAATCCAGGAAGATTTGT
AAGGTTACAGGCTTTTGAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_p15.b1 MSMg01no487_p15.b1 CHROMAT_FILE:
MSMg01no487_p15.b1 PHD_FILE: MSMg01no487_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:45 2005
         (722 letters)



>mm_chr12_31072308_31073429
          Length = 1122

 Score = 1382 bits (715), Expect = 0.0
 Identities = 718/719 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgggaagtccgtgggaaggaagatcagaagagtaatactttaaatgtgcaga 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgggaagaccgtgggaaggaagatcagaagagtaatactttaaatgtgcaga 263

                                                                       
Query: 64  attaaacacaaagcaatcacaagaaaacaggtcaaacactttaaattgtaatttattgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attaaacacaaagcaatcacaagaaaacaggtcaaacactttaaattgtaatttattgta 323

                                                                       
Query: 124 agtgtgtgattttcttgaaacctcctaatgacagtgctatggaaatgcttgaggcacggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgtgtgattttcttgaaacctcctaatgacagtgctatggaaatgcttgaggcacggt 383

                                                                       
Query: 184 ggtttgcagctcccacttgtagtaaaagaaaatgctgggttttagttagagataaacaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtttgcagctcccacttgtagtaaaagaaaatgctgggttttagttagagataaacaac 443

                                                                       
Query: 244 cacattactgaaaggtgctctccatgttttctccttaagtttagattctccaggtgctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacattactgaaaggtgctctccatgttttctccttaagtttagattctccaggtgctca 503

                                                                       
Query: 304 gctggactttaaaactgttaattggcttgtttttactttgaagattccctacattagtac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctggactttaaaactgttaattggcttgtttttactttgaagattccctacattagtac 563

                                                                       
Query: 364 acacacatttgcattattttcacacacaccccattcctgactccatgcttccatgcttca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acacacatttgcattattttcacacacaccccattcctgactccatgcttccatgcttca 623

                                                                       
Query: 424 tgaccacttcttctgtatatataatttatccttctgagtccaattactggcagtctgtta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaccacttcttctgtatatataatttatccttctgagtccaattactggcagtctgtta 683

                                                                       
Query: 484 cttgcatttagtgatctgtcatttgcattcatttggggttgatcacttaggaaaaaagag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttgcatttagtgatctgtcatttgcattcatttggggttgatcacttaggaaaaaagag 743

                                                                       
Query: 544 gaaccaattaagcccaaatccattagacgaaaaattaacaaaataatagtaatagcaaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaccaattaagcccaaatccattagacgaaaaattaacaaaataatagtaatagcaaag 803

                                                                       
Query: 604 caatgcaaagaaacaatgaatctaagaacttcttttaaagcaatagaaagatttacaaaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caatgcaaagaaacaatgaatctaagaacttcttttaaagcaatagaaagatttacaaaa 863

                                                                      
Query: 664 tcttagttgaattaactggaagaggagacccattttaataaaatatatatgaacaggga 722
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tcttagttgaattaactggaagaggagacccattttaataaaatatatatgaacaggga 922


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no487_p15.g1 MSMg01no487_p15.g1 CHROMAT_FILE:
MSMg01no487_p15.g1 PHD_FILE: MSMg01no487_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:45 2005
         (632 letters)



>mm_chr12_31094920_31095951
          Length = 1032

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgacccagactcatttgttttgttgaagctttccaacactcaaggactaccagcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgacccagactcatttgttttgttgaagctttccaacactcaaggactaccagcaagt 265

                                                                       
Query: 61  gaacatcctgtggattggaaaacccaaggtgcctatcaccacaaaacaaggaaagaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaacatcctgtggattggaaaacccaaggtgcctatcaccacaaaacaaggaaagaaaca 205

                                                                       
Query: 121 gcggagctctcactgtttcccggaaataagggatagtttacttttgagccagtttgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcggagctctcactgtttcccggaaataagggatagtttacttttgagccagtttgagtg 145

                                                                       
Query: 181 actatggaccagaaatacaactttaggtttctcaaaattccatttttaatgtggaagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 actatggaccagaaatacaactttaggtttctcaaaattccatttttaatgtggaagcag 85

                                                                       
Query: 241 tcttgtgaagttttacagttttacaaaatgaagaaagccataaatcaaggcaaactcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tcttgtgaagttttacagttttacaaaatgaagaaagccataaatcaaggcaaactcaaa 25

                                   
Query: 301 ttactttgttggttacatcacaga 324
           ||||||||||||||||||||||||
Sbjct: 24  ttactttgttggttacatcacaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |