Query= MSMg01no488_d10.b1 MSMg01no488_d10.b1 CHROMAT_FILE:
MSMg01no488_d10.b1 PHD_FILE: MSMg01no488_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:04 2005
(668 letters)
>mm_chr12_52448791_52449858
Length = 1068
Score = 1185 bits (613), Expect = 0.0
Identities = 648/665 (97%), Gaps = 11/665 (1%)
Strand = Plus / Plus
Query: 5 gaattcgcctttgcgcgccttctcattagcatgggcaagcctcctcccagcgtgtggcct 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgccttcgcgcgccttctcattagcatgggcaagcctcctcccagcgtgtggcct 264
Query: 65 gttggggggtgactggtgcgctccgcacgcctccgcggacgtgcaggaccgggagttgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggggggtgactggtgcgctccgcacgcctccgcggacgtgcaggaccgggagttgtt 324
Query: 125 ttcct-gccggggtccgcgcagccacccctgcgcgcacgcccgatcttcattcccacccc 183
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ttcctggcc-gggtccgcgcagccacccctgcgcgcacgcccgaacttcattcccacccc 383
Query: 184 cacccccccaaccccgaaagccaaggcgcagacgcagcctccctgcgtccacttccccgg 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 c---------accccgaaagccaaggcgcagacgcagcctccctgcgtccacttccccgg 434
Query: 244 ggaggggccgagcagccgtgggttccgggtcgcaaacggaagtggacgacgaatttgaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggaggggccgagcagccgtgggttccgggtcgcaaacggaagtggacgacgaatttgaat 494
Query: 304 tgtgcgagccgttggatggggctgagcgggttgggcgtacggcagcgctgcggtcgacgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtgcgagccgttggatggggctgagcgggttgggcgtacggcagcgctgcggtcgacgt 554
Query: 364 gagcggtaacgcggcgagcctgggacttgtgccccgcgcctggtgaagacgtgcccgggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gagcggtaacgcggcgagcctgggacttgtgccccgcgcctggtgaagacgtgcccgggg 614
Query: 424 acggacggaggtgtcacgggcggccgggtaggtgtgagcggtaggaggcttctccacgcg 483
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 615 acagacggaggtgtcacgggcggccgggtaggtgtgagcggtagggggcttctccacgcg 674
Query: 484 ctggacgtgcgcgccctgccgctgtcgagccccgagctgctctttattaattaaagaggg 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctggacgtccgcgccctgccgctgtcgagccccgagctgctctttattaattaaagaggg 734
Query: 544 aaggagggagggcttcacggaggggtgcccgttgtggctcccagttgctcttgagaccgg 603
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaggggggagggcttcacggaggggtgcccgttgtggctcccagttgctcttgagaccgg 794
Query: 604 tccctcaccgcagagaaatgacagccttgaaatgcctcgaggggatttaagctgaaatcc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tccctcaccgcagagaaatgacagccttgaaatgcctcgaggggatttaagctgaaatcc 854
Query: 664 gagta 668
|||||
Sbjct: 855 gagta 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_d10.g1 MSMg01no488_d10.g1 CHROMAT_FILE:
MSMg01no488_d10.g1 PHD_FILE: MSMg01no488_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:04 2005
(623 letters)
>mm_chr12_52621335_52622357
Length = 1023
Score = 984 bits (509), Expect = 0.0
Identities = 524/529 (99%)
Strand = Plus / Minus
Query: 1 aggacctttggaagagcagtcagtgctcttaaccactgagtcatctttccagccccaggc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aggacatttggaagagcagtcagtgctcttaaccactgagtcatctttccagccccaggc 470
Query: 61 tcccctaattctaattttaaaacgagtatttctctgttatatgggtttcctttgcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcccctaattctaattttaaaacgagtatttctctgttatatgggtttcctttgcttctc 410
Query: 121 catagactcttgcacgtctttggttaatttattctggactctccctattggtctcaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 catagactcttgcacgtctttggttaatttattctggactctccctattggtctcaacat 350
Query: 181 aacttctatctctattgacattttgtcctctaatcctttaatgaatgacattaatcggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aacttctatctctattgacattttgtcctctaatcctttaatgaatgacattaatcggtt 290
Query: 241 ttctaaaacaaaccagtcttagattcctaacagtcactgaacttagatttgtttcagcta 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 289 ttctaaaacaaaccagtcttagattcctaacagtcactgaacttagacttgtttcagcta 230
Query: 301 gcctggttgaccagcaagcccctgggatcttgcctgcctccacctcgccagcattaggat 360
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 229 gcctggttgaccagcaagcccccgggatcttgcctgcctccacctcaccagcattaggat 170
Query: 361 tgtaggtagatacttttacatgggtacagccatctaaactcagctctgcatgcttatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgtaggtagatacttttacatgggtacagccatctaaactcagctctgcatgcttatgtg 110
Query: 421 ccaagtactttagccactctactgggtggttttatgtgtcaacttgacataggctggagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ccaagtactttagccactctactgggtggttttatgtgtcaacttgacataggctggagt 50
Query: 481 tatcacagagaaaggagcttcaggtgaggacatgcctccaggagatcca 529
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 49 tatcacagagaaaggagcttcaggtgaggacatgcctccatgagatcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
