Query= MSMg01no490_j15.b1 MSMg01no490_j15.b1 CHROMAT_FILE:
MSMg01no490_j15.b1 PHD_FILE: MSMg01no490_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:14 2005
(326 letters)
>mm_chr12_82181782_82182507
Length = 726
Score = 578 bits (299), Expect = e-169
Identities = 318/325 (97%), Gaps = 5/325 (1%)
Strand = Plus / Minus
Query: 1 tcttctgctcaccagct-gagtggcattaggcaactcacgcagcctctctgaacctcagg 59
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tcttctgctcaccagctag-gtggcattaggcaactcacgcagcctctctgaacctcagg 639
Query: 60 ctcttcatttgtaaaataataataataataataccatttctgtggactgggcctgagggc 119
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctcttcatttgt--aat-ataataataataataccatttctgtggactgggcctgagggc 582
Query: 120 agatgagaaactgcatatagtgcatactgcaaacactgggtacgtggtagctctgtttgt 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agatgagaaactgcatacagtgcatactgcaaacactgggtacgtggtagctctgtttgt 522
Query: 180 tagtgctccctgaacagctctgagctagagatggatagcacagacaagagcagggaacat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tagtgctccctgaacagctctgagctagagatggatagcacagacaagagcagggaacat 462
Query: 240 acaaggaagaagtgctccagctggcttcatcctccgactcttctcacagatcagcacaga 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acaaggaagacgtgctccagctggcttcatcctccgactcttctcacagatcagcacaga 402
Query: 300 gtctctagggaccactgatgcagca 324
|||||||||||||||||||||||||
Sbjct: 401 gtctctagggaccactgatgcagca 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_j15.g1 MSMg01no490_j15.g1 CHROMAT_FILE:
MSMg01no490_j15.g1 PHD_FILE: MSMg01no490_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:14 2005
(571 letters)
>mm_chr12_82029696_82030666
Length = 971
Score = 1042 bits (539), Expect = 0.0
Identities = 563/571 (98%)
Strand = Plus / Plus
Query: 1 cctgtttaaattttaccttttaagaatagaattattaggaaatcttatatctgtgtcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtttaaattttaccttttaagaatagaattattaggaaatcttatatctgtgtcttg 260
Query: 61 tgttcttatttctaccagacagtgctgggttagataatcaccgttagactagggacactt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcttatttctaccaggcagtgctgggttagataatcaccgttagactagggacactt 320
Query: 121 tttaataagcatctgagggatgtctagttaatgattactagacgcctcccaggactggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaataagcatctgagggatgtctagttaatgattactagacgcctcccaggactggtt 380
Query: 181 aaaggtccttgggcttctcccaggatcacagctagcaaggggagcttccccataaaggct 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggtccttgggcttcgcccaggatcacagctagcaaggggagcttccccataaaggct 440
Query: 241 tctatttcttgttcaatgccatatgttaaaatctagccatactgttgtgtacctgtaatg 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctatagcttgttcaatgccatatgttaaaatctagccatactgttgtgtacctgtaatg 500
Query: 301 ccagagatagaagcatcacaagttcaagggtaacctgggctacacagtgagattctgttt 360
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 501 ccagagatagaagtatcacaagttcaaaggtaacctgggctacatagtgagattctgttt 560
Query: 361 caaaacaaaacaacaaaaccagcctagcagaaaactgttcaagtcctccactaggaagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaacaaaacaacaaaaccagcctagcagaaaactgttcaagtcctccactaggaagac 620
Query: 421 aaagatcccattcagaccatgagttctactctggttgggatttgggacagtttgaatctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagatcccattcagaccatgagttctactctggttgggatttgggacagtttgaatctg 680
Query: 481 taggcatgggctatggaaggcccagatattgcactgttgacttccccactggactgaaac 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taggcatgggctaaggaaggcccagatattgcactgttgacttccccactggactgaaac 740
Query: 541 gactgcttctctgagtttcagaagcattgac 571
|||||||||||||||||||||||||||||||
Sbjct: 741 gactgcttctctgagtttcagaagcattgac 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
