Query= MSMg01no491_b18.b1 MSMg01no491_b18.b1 CHROMAT_FILE:
MSMg01no491_b18.b1 PHD_FILE: MSMg01no491_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:55 2005
(656 letters)
>mm_chr12_109067865_109068922
Length = 1058
Score = 1164 bits (602), Expect = 0.0
Identities = 641/656 (97%), Gaps = 8/656 (1%)
Strand = Plus / Plus
Query: 6 gaattccattcttg--ttctaattgtccagggatggtctaaagggcaggttgaaggacca 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccattcttggct--taattgtccagggatggtctaaagggcaggttgaaggacca 263
Query: 64 cacctgaaagactcactcaggtcctcggttcaccgcaggaagtagagatgactcctttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacctgaaagactcactcaggtcctcggttcaccgcaggaagtagagatgactcctttaa 323
Query: 124 gagaacttagctttctaagatgtattgtcgcaatgggcgcagaaggtcaaatgtaaaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagaacttagctttctaagatgtattgtcgcaatgggcgcagaaggtcaaatgtaaaagt 383
Query: 184 cctatcacgcatggataagaaac--gctccacgggcctcagcacagtctgaggctctgcc 241
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 cctatcacgcatggataagaaacaggctccacgggcctcagcacagtctgaggctctgcc 443
Query: 242 atggctgcttcccaggactcttccctctgcagccctgggaaccagggagagcactggaac 301
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 444 atggctgcttcccaggactcttccctctgcagccctggtaaccagggagagcgctggaac 503
Query: 302 tagggtgctggagaggatgtttgt-aggacgcaggcaggtgttagggtctgacagacaag 360
||||||||||||||||||| || | ||| ||||||||| |||||||||||||||||||||
Sbjct: 504 tagggtgctggagaggatg-ttctcaggtcgcaggcagatgttagggtctgacagacaag 562
Query: 361 ctacctgcatcaaaccttctttccagtcaaaactggcagggcacacttggcaggtactcc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgcctgcatcaaaccttctttccagtcaaaactggcagggcacacttggcaggtactcc 622
Query: 421 cactgagatgacctgcccttgccttcgtgtatccctacagtgggaagcagtcgggcactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cactgagatgacctgcccttgccttcgtgtatccctacagtgggaagcagtcgggcactg 682
Query: 481 ttacattacccctccgtccttctgtacatcctaaagtccaaaggacccctggggaaggac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttacattacccctccgtccttctgtacatcctaaagtccaaaggacccctggggaaggac 742
Query: 541 acatcctggcctgcaagctgctggaacgcccagttccactgattgaggttctggcattga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acatcctggcctgcaagctgctggaacgcccagttccactgattgaggttctggcattga 802
Query: 601 gcctccccaaggtcacagctagagctctgagcctggattcaataacatccctccat 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 803 gcctccccaaggtcacagctagagctctgagcctggattcaataccatccctccat 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1058
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1048
Effective search space: 677008
Effective search space used: 677008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_b18.g1 MSMg01no491_b18.g1 CHROMAT_FILE:
MSMg01no491_b18.g1 PHD_FILE: MSMg01no491_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:55 2005
(564 letters)
>mm_chr12_109163526_109164486
Length = 961
Score = 851 bits (440), Expect = 0.0
Identities = 533/594 (89%), Gaps = 50/594 (8%)
Strand = Plus / Minus
Query: 18 ttctctttctttttctttttctttctttatttttgtagaaattggaatttgttttatatt 77
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ttctttttctttttctttttctttctttatttttgtagaaattggaatttgttttatatt 578
Query: 78 cagctaagttattttcttttccacacattttcggtccttccgctcagacaggctccaaac 137
||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||
Sbjct: 577 cagctaagttattttctttaacacacattttctgtccttcc-c-cagacaggctccaaac 520
Query: 138 ctgttttcaagttccacctccagggtttcccctctgcattgagggtcccatctccatgcg 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctgttttcaagttccgcctccagggtttcccctctgcattgagggtcccatctccatgcg 460
Query: 198 ttggactcctttcttctactagcctgtccttgctttccttcctaaagtcagcattaggat 257
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 459 ttggactcctttcttctaccagcctgtccttgctttccttcctaaagtcagcattagggt 400
Query: 258 gttctcagagggccttccctagggctcccaagttgctaggactcacctttctttatggac 317
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 399 gttctcagagggccttccctagggctcccaagttgctaggactcacctttc-ttatggac 341
Query: 318 tcgatacttgaacccttgctggaaatcacgtaatcaccgatgtcttgctgactgtggttc 377
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcgatacttgaaccctcgctggaaatcacgtaatcaccgatgtcttgctgactgtggttc 281
Query: 378 cgtgaacgcagcccttctcctgctcc---------------------------------- 403
|||||| |||||||||||||||||||
Sbjct: 280 cgtgaaagcagcccttctcctgctccatggccctggctcacagtgcttcatcagtctctg 221
Query: 404 ----gt---------ggcaggtggccacacgaggataaagggtactgggaagttgctgcg 450
|| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 220 cagtgtagagagcgaggcaggtggccacacaaggataaagggtactgggaagttgctgcg 161
Query: 451 agcatttgcgtgaaggaacagttttccttcccagacatggtgtgaccttggagacacaac 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 160 agcatttgcgtgaaggaacagttttccttcccagacatggtgtgaccttggagacagaac 101
Query: 511 tcctgggaacagaccgattcttaatgttcagcatttagtttagttcgggaggca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tcctgggaacagaccgattcttaatgttcagcatttagtttagttcgggaggca 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 961
Length adjustment: 10
Effective length of query: 554
Effective length of database: 951
Effective search space: 526854
Effective search space used: 526854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
