BAC Information

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BAC

Clone NameMSMg01-491G04
Chromosome12 (Build37)
Map Location 72,596,222 - 72,596,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040965, LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
Downstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491G04.T7 (MSMg01no491_g04.b1)MSMg01-491G04.TJ (MSMg01no491_g04.g1)
ACCAG569392AG569393
length748764
length of high quality
(start - end)
237 (58 - 294)249 (58 - 306)
definitionCHROMAT_FILE: MSMg01no491_g04.b1 PHD_FILE: MSMg01no491_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:17 2005CHROMAT_FILE: MSMg01no491_g04.g1 PHD_FILE: MSMg01no491_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAAACACCACATATTTCTTACCCGCCGGAATCTGCCACACTTCTATAA
TAAGAAGGAGCGGTTGCTATTTAAAGCTGGAGTGCTATTGTCTTGTAGAC
ATATCTTTTTGCTCCCTGGTTTGTGTGTGTATGTGTGTGTGTGCGTGTGG
GTGCTCGCGAGTGCCTGCCTACATTTTTGGAAATTTACCACCTTTCAATT
TCCTAATAAATCGTTTCCATTATGCTTTCTTTATTATGCTTCACAATAAC
AAGCACAATGGTGTGCTCACAATACCAGGAGAGCAACGGCTGTACTTTTT
TATTTTGAGAATTCAATATAGAGCCGAATAGCTATGATATCTTTGTATTG
GAAACAACACAACACTCCTTGGGCAGGTCACTAGACACAAGGCAAGGCTG
TGTCTATGAACAGTCACCATGGGTTTAAGTGGAAGCTGTGGGGCCGTATC
CCAGTTAAAAATACTTTCAGGCCTTGGTTCCTAGGATAGTATTTTACTCA
TTTGAAAGTCTATGCCTTATGTGTACCATAAGCATGCAGTGGCCCTGGAG
GCCAGAAAAATGTATTGGATCCTCTGGAACTGGAGATGTTAGTAGCTGTG
AGTATGTGTGGATGCTGGTAAACAAACCCAGGTCCCTTGTTTAAGCTTCA
AGTGCTCCCTAACATTGAACCATTCCCCTGCCCTATTTGACATTATTTTA
TATTTAAACAATCCTGTGGTCTTAATGTCAAGCACATTTTCTTTCTTC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGC
CGAATCACAGGCAGCAGGAAGAGAGAGTGAGAGAGCACTGGATAAGGCTT
GAGCATTCGAAAGCCTAAAGCCCAACCCCACTGACACACTTCCTCCAGCA
AAACCACACCCACTACCAGAAGGTCACACCTTCTAAGCCCTGTCAAGTAG
CACCACCCTCTAAGGACCAAGCATTCAAATACATGAGCCTATGGGGCCAT
TCTTATTCAAACTACCTAGGCTGACCTGTAAGAAATTTTCTCAGTTGGGT
TAATTGTATTTTTAAAGATGCACCCTAAGTCTAGGCTTGCTTTCCAACTG
CACAGATGGCTGAGTTGACCAATTGTTGCTGTGATAATAGTAACAGCTCT
ACGGTTGAATGTGTTCAGTGCCAAACAATGTGATATTTCTAAACTTTTTG
AGTTCTGGGTGCTAGCCTACCTTTATTAAAAGGATGGCTGCAGGAGAGAC
CCTAGGGAATAACACTAATACATTTTTGTAAATATTTATTGTTAAGGCTA
GTTCTTAAAATAAACATAATACCTAAAAAAGTGACACCTAAATTCCTTTT
AAGACAGTGGATCTTAACCTTCCTAATGCTGCAACCCTTTAACACAGGTC
CTCATGTGGGGAAGACCCCAAACATTAAATCATTTCCATGCTACTTCATA
CTGTAGAGTTTTGTTCTGGTTATGAACCAAAATGTAAAAATCTTAAAATC
CTGGAAGCTGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_g04.b1 MSMg01no491_g04.b1 CHROMAT_FILE:
MSMg01no491_g04.b1 PHD_FILE: MSMg01no491_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:17 2005
         (237 letters)



>mm_chr12_72596025_72596661
          Length = 637

 Score =  329 bits (170), Expect = 1e-94
 Identities = 222/240 (92%), Gaps = 4/240 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   agcg-gttgctatttaaagctggagtgctattgtcttgtagaca-tatctttttgctccc 59
           |||| |||||||||||||||  |||||||||||||||| ||| | |||||||||||||||
Sbjct: 198 agcgtgttgctatttaaagccagagtgctattgtcttgaagagattatctttttgctccc 257

                                                                       
Query: 60  tggtt--tgtgtgtgtatgtgtgtgtgtgcgtgtgggtgctcgcgagtgcctgcctacat 117
           |||||  |||||||||||||||||| ||||||||| | ||||  ||||| ||||||||||
Sbjct: 258 tggtttgtgtgtgtgtatgtgtgtgggtgcgtgtgtgcgctcttgagtgtctgcctacat 317

                                                                       
Query: 118 ttttggaaatttaccacctttcaatttcctaataaatcgtttccattatgctttctttat 177
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||
Sbjct: 318 ttttggaaatttaccacctttcaatttcctaataaatcgttcccattatgctttcaaaat 377

                                                                       
Query: 178 tatgcttcacaataacaagcacaatggtgtgctcacaataccaggagagcaacggctgta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tatgcttcacaataacaagcacaatggtgtgctcacaataccaggagagcaacggctgta 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)