BAC Information

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BAC

Clone NameMSMg01-491J03
Chromosome12 (Build37)
Map Location 31,445,571 - 31,549,611
singlet/doubletdoublet
Overlap geneLOC100043055
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneAcp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491J03.T7 (MSMg01no491_j03.b1)MSMg01-491J03.TJ (MSMg01no491_j03.g1)
ACCAG569533AG569534
length718712
length of high quality
(start - end)
470 (75 - 544)558 (69 - 626)
definitionCHROMAT_FILE: MSMg01no491_j03.b1 PHD_FILE: MSMg01no491_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:31 2005CHROMAT_FILE: MSMg01no491_j03.g1 PHD_FILE: MSMg01no491_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,445,571 - 31,446,040)(31,549,054 - 31,549,611)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAATTCAA
GTATCAGCTTTCTTTGTTTGCTGCAGACATCTATAACTGGGTAACTTCTC
AGCCTCCCCAGACTCCCAGTCCCTTGTTTCTTCCTCATGATGGACTAGGA
ATGCTAGATCCCTTTTCCTGTAACTAGGTGTAGATTTGTGATATATGAGC
ATAAACCTACCGAAGAATTTCCATGGAGTTTGCTTTCTTTACAAATGGAG
CTAAAGTAGAAGGCAGGAAGGTTGGCAGCAGGCTGTGCCTTCTTTACATC
TACTGTCTGGAGTTTTGTTTGTGTAGAGCAGCATCTTTATCACCAAACAT
AGTCATATTTCATCAATGGATTGAGAAAAATTATCCTTTTAGCTCTTGGT
ATGTTGGGCAAACTCATGGAATTTACTGGAATTGAGTAACTTCTCTCTTT
CTTTCTCTTGTTACCTTTAATTGTTTTAATTTTAAATGCAGGTCTTTCAT
TTTATCCTGCAGAGGGCCCAGCACACTGCCCAGCACTCTGCTGTCGTGAT
ACAGATCAAACAATGCTGGTAGATTTGCTCTGTTGTCTGAGTATTTCTAA
GTTGATCGTAGTGCCTGAACCAGTTTCTATCGGAGATGAGAACCCCCCGG
TTTAGATGATGAACTCCGCTTCCTGACGGGACTAGCTAAGATTGCCTTGA
TACTTTAATCTGGGTTAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATAATCATGTGGCATAGCAGACCACTGGCCA
TTTCTCTGGACCCTGGCCAGGTATCTTATGCACCAACAGTACTAGAATTT
TTCATCCTCCTCTGGTGGCTTAGCAAGTGACAGGAAAAGCACCCAGATGT
AAACAACACACTGAGCCAGCAGGAAGGCTGGAAAGGGGCCAGCCAGGCCC
TCCCAGACAACATTGCATGGTGTAAAGGACCTGGCACAATCCAGCCCCTC
ACCCTCCTGGCCAACACAACTGATACTGTACATGCTAATTACAAGAGGCC
TGTGAAAATGTGAGATTCCACTCTAGATCGGACTTGACACATCAAATATC
CCGGCAAAGTTGTTTCCCATGGGCACCAAGCAAGGGACTGAGCTATTAAT
CAAAGGTAGGCCAGGCTGTCACACCTACTTTGCTCTGAAGTTCCCATGCA
CTCGAGGAAGCACAGCTGAGGAGAAATCCAGACTTTTCAAAAGCATTGCT
ACTCCTTGAATTAGGCAAGATGGGGTATAGCGCCTTGGACATTTATTGAA
GTCCAGTCGGCAAGCACATCACATGCTGGCTAACGGAATTCCTTCTCCTT
CTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCATCTCCTTCTCCTTCT
CCTTCTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_j03.b1 MSMg01no491_j03.b1 CHROMAT_FILE:
MSMg01no491_j03.b1 PHD_FILE: MSMg01no491_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
         (470 letters)



>mm_chr12_31445371_31446240
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacatctataactgggtaacttctcagcctccccagactcccagtcccttgtttcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacatctataactgggtaacttctcagcctccccagactcccagtcccttgtttcttcc 260

                                                                       
Query: 61  tcatgatggactaggaatgctagatcccttttcctgtaactaggtgtagatttgtgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgatggactaggaatgctagatcccttttcctgtaactaggtgtagatttgtgatat 320

                                                                       
Query: 121 atgagcataaacctaccgaagaatttccatggagtttgctttctttacaaatggagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagcataaacctaccgaagaatttccatggagtttgctttctttacaaatggagctaa 380

                                                                       
Query: 181 agtagaaggcaggaaggttggcagcaggctgtgccttctttacatctactgtctggagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagaaggcaggaaggttggcagcaggctgtgccttctttacatctactgtctggagtt 440

                                                                       
Query: 241 ttgtttgtgtagagcagcatctttatcaccaaacatagtcatatttcatcaatggattga 300
           |||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggaagtgcagagcagcatctttatcaccaaacatagtcatatttcatcaatggattga 500

                                                                       
Query: 301 gaaaaattatccttttagctcttggtatgttgggcaaactcatggaatttactggaattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaaattatccttttagctcttggtatgttgggcaaactcatggaatttactggaattg 560

                                                                       
Query: 361 agtaacttctctctttctttctcttgttacctttaattgttttaattttaaatgcaggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaacttctctctttctttctcttgttacctttaattgttttaattttaaatgcaggtc 620

                                                             
Query: 421 tttcattttatcctgcagagggcccagcacactgcccagcactctgctgt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcattttatcctgcagagggcccagcacactgcccagcactctgctgt 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no491_j03.g1 MSMg01no491_j03.g1 CHROMAT_FILE:
MSMg01no491_j03.g1 PHD_FILE: MSMg01no491_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:31 2005
         (558 letters)



>mm_chr12_31548854_31549811
          Length = 958

 Score = 1071 bits (554), Expect = 0.0
 Identities = 557/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataatcatgtggcatagcagaccactggccatttctctggaccctggccaggtatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 cataatcatgtggcatagcagaccactggccatttctctggaccctggccaggtatctta 699

                                                                       
Query: 61  tgcaccaacagtactagaatttttcatcctcctctggtggcttagcaagtgacaggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgcaccaacagtactagaatttttcatcctcctctggtggcttagcaagtgacaggaaaa 639

                                                                       
Query: 121 gcacccagatgtaaacaacacactgagccagcaggaaggctggaaaggggccagccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcacccagatgtaaacaacacactgagccagcaggaaggctggaaaggggccagccaggc 579

                                                                       
Query: 181 cctcccagacaacattgcatggtgtaaaggacctggcacaatccagcccctcaccctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cctcccagacaacattgcatggtgtaaaggacctggcacaatccagcccctcaccctcct 519

                                                                       
Query: 241 ggccaacacaactgatactgtacatgctaattacaagaggcctgtgaaaatgtgagattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggccaacacaactgatactgtacatgctaattacaagaggcctgtgaaaatgtgagattc 459

                                                                       
Query: 301 cactctagatcggacttgacacatcaaatatcccggcaaagttgtttcccatgggcacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cactctagatcggacttgacacatcaaatatcccggcaaagttgtttcccatgggcacca 399

                                                                       
Query: 361 agcaagggactgagctattaatcaaaggtaggccaggctgtcacacctactttgctctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agcaagggactgagctattaatcaaaggtaggccaggctgtcacacctactttgctctga 339

                                                                       
Query: 421 agttcccatgcactcgaggaagcacagctgaggagaaatccagacttttcaaaagcattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agttcccatgcactcgaggaagcacagctgaggagaaatccagacttttcaaaagcattg 279

                                                                       
Query: 481 ctactccttgaattaggcaagatggggtatagcgccttggacatttattgaagtccagtc 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 278 ctactccttgaattaggcaagatggggtatagtgccttggacatttattgaagtccagtc 219

                             
Query: 541 ggcaagcacatcacatgc 558
           ||||||||||||||||||
Sbjct: 218 ggcaagcacatcacatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)