BAC Information

Click to search

BAC

Clone NameMSMg01-492B10
Chromosome12 (Build37)
Map Location 113,433,978 - 113,434,212
singlet/doubletsinglet
Overlap genenone
Upstream geneTraf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492B10.T7 (MSMg01no492_b10.b1)MSMg01-492B10.TJ (MSMg01no492_b10.g1)
ACCAG569929AG569930
length712797
length of high quality
(start - end)
238 (79 - 316)---
definitionCHROMAT_FILE: MSMg01no492_b10.b1 PHD_FILE: MSMg01no492_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:13 2005CHROMAT_FILE: MSMg01no492_b10.g1 PHD_FILE: MSMg01no492_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGNAAATCCGCGG
NAANCAGCTGAGATCCCTAAACAGAGAAGTTTCTTTAGCAAAGAAGAATT
GTCTAGTGCACACCATGGAAAGACTGAGGCAGGCAGACCAAAGGCCCAGT
GGCGCCAGTACAGTGGGCTCTGGCTGGGTGTTAAGAGCCTTTTTATGAGT
ATTTATGAGGTGGGTAGCAGACTACATGGGCATAAGATGACCCCTTTCTC
CTTCCAATTCATGGCCTATCAGATTTCCCTTTCAGAGTATTTCTTCTGAG
GCTCAATGGCACATTTTATATTTTATCATAGTGAAGACAGGGTCTTGTGA
GAATTCAGACATTGCCAGTCTTTCCCAGTGAACCCATCCTACACGGTGTT
ACCAGCCTCACTGGTTTGACGCTCAATTGCCCACACTGGCCTTGAACACA
GGGCCCTCCGGCCAGCCTCTTGAGCACATGGGCTTCCAGCTGTTGTGCTT
CTTCAGTCCTGAACAAGAATGGCTCTCTTGGAGTCTACATTCACAAAGTT
CCGTTTCCTGATGCTGACCACACTGGATAGGCAAGGACTTCCTGGAGGCC
TCACGATACCTCTGATGCCCTGACATACGAGGTTGGTTCTACCAGTCACC
TCTCCGGGACTCTGGACACTGTTGCTCCCTATACCCTTCTTGGCCAGAAT
CCTACAGCCTTT
ACATGAAGNGGTAGGCTGGNGGCGTCTGGCCGTCCGCACCAGTNAACNAT
AGAAGGATTCAGGCATCGAGAGCGNGAGCTGNGTAGCTTGTGTGGTGGGG
GTGGGGGAGTTGCCCCCCCAGAGACCCTGTAGAACCCAGTCGCCCCTCTG
ACCTTGTTTGGGCGGAGGGGGAGAACCCACACCCCGATCACCAGGGATAG
ACACATGTGTCGAAGGCTGCCCACGCCCACCATCGGCAGAGTTTTTTCCA
CCTTTGAGACCGCCAAGGCCCGGAGAGCCAAAGAACGAGAAACGGCCAAG
CCCAACATTTTCGTAGTTTAGGCCCCACGAGGACCCCCCCAAAGGAGGGA
AATCATTTTCGCCCCCGTGCACCTTTGCAGTCTGAAATACCATACGCGGA
TCACTAACACCCACAAGACCCATTTTACAGGCGCCACCCGATTTCACACC
GCTACACCCCCCGATTACGACATTCACGCAAAACAGACGAACCTATCCCC
GCACGCGGACGTGACCACTCAATACACACAAAGGTAAAACGCCACCCTAC
CTCCCCCCCCCTCTCCACCCCATATCACCTTAACCGTACTCCTGTCCCCG
CTACCAACAGCACCACTTGCAGTACACAAGCAACTTACTCCCCCCCATTA
CTACCGTCGACCAACTTCAAGAGCCCGTTTTTCTATTTTCTTTGTGTCAT
CGACCCAAGACATCCCACCACCGAACACCCCCACCCTCCGCGTACAGCGA
CTCGAGTAGCGCGATGCTACCCAACCGCAGACCCCCACTCTATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_b10.b1 MSMg01no492_b10.b1 CHROMAT_FILE:
MSMg01no492_b10.b1 PHD_FILE: MSMg01no492_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:13 2005
         (238 letters)



>mm_chr12_113433778_113434415
          Length = 638

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttctttagcaaagaagaattgtctagtgcacaccatggaaagactgaggcaggcagac 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gtttctttagcaaagaagaattgtctagtgcacaccagggaaagactgaggcaggcagac 260

                                                                       
Query: 61  caaaggcccagtggcgccagtacagtgggctctggctgggtgttaagagcctttttatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaggcccagtggcgccagtacagtgggctctggctgggtgttaagagcctttttatga 320

                                                                       
Query: 121 gtatttatgaggtgggtagcagactacatgggcataagatgacccctttctccttccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttatgaggtgggtagcagactacatgggcataagatgacccctttctccttccaat 380

                                                                  
Query: 181 tcatggcctatcagatttccctttcagagtatttcttctgaggctcaatggcaca 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggcctatcagatttccctttcagagtatttcttctgaggctcaatggcaca 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)