BAC Information

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BAC

Clone NameMSMg01-492N16
Chromosome12 (Build37)
Map Location 40,030,641 - 40,030,936
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492N16.T7 (MSMg01no492_n16.b1)MSMg01-492N16.TJ (MSMg01no492_n16.g1)
ACCAG570511AG570512
length663729
length of high quality
(start - end)
---296 (317 - 612)
definitionCHROMAT_FILE: MSMg01no492_n16.b1 PHD_FILE: MSMg01no492_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:11 2005CHROMAT_FILE: MSMg01no492_n16.g1 PHD_FILE: MSMg01no492_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCGCTAACAATCACAATTTCAAGACCGCGNAATCATCTTTTCTA
TCATGACACCCCACACACAGATAAAGGAAAAGGAAGATATGTCCCTGAAT
CTACTGACTTCCATGTATCCGGGGAACTACCTGCTACCCTCATTGTGCAT
ATAAATACATACTCATGATTTCTACTATAACAATTAAAATCAACGGTATA
TTCATATTATACAAAAATTGCATACAAATGTCTAGCCCAATTGCCGAATT
ATACATTTTATAATGAATTTAAAATTCTTTACCCTTTTTTTCACCGAGAA
GGATTTCGAACCCGTACTTATGACCCTGGTTATTAATTTAAAACTTTGAC
ATTTTATTTTTCACAATATTCTTAAAAAAGGGGTTAAAACCCCATTTCTG
GGGGCCCCCCCTCTTCCACNNNNNCTCTCTCTCCCCCTTTNNNNNNNCCC
NNACCGCAGCGAGGAGTCCCTCANNNTNNNTNNTTTTCCCTATTATAAGT
TCGGGTATCTTANANTATTTCTCTTTCTTTTTTTACATTTATTTCCTCTT
TTTTTTTTCCCCTATCATGGCTCGCTTCCCTTATTACTACTATTTACTTC
CTNTTTATCCCTCCCTTCATCTTCTTTCCTTTCCCCTCTTCACCTCTTCT
TTCTGTGGGGGAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTACCAGCCAAAATCGTTGNTCAATCTTCAAGTGTCCTTATTTTA
GAAGTACTATTTCATGAGCAAAACCATTTTCTGCATTAAATAAATAAGTA
TGCTATTATTAGCAATTTGTACTGTTAAAGTTTTATTGACAGGATAGAAT
ATGCCAGTAAAATAAATTTAGAATATTACTTAGGCAAATGTTTATTGAAT
GAAACCAAGATTTAGCTTCAAATAATCTTCTTACCTGAAAAATATCTTCC
AATCTCTTTGTGTTAAGGGAAATGTTGAGTTGTAAAGGGTTTTGAAAGTA
TATGGTAATTTAAATCTGGGCTACTGCCTTCCTAAGTCCATAAGTCTGGT
TTTATGCTCATTTCTGACAAAATATAGAAATAAAATCACCCACATGGCAA
GATTATAATGCTCAAATAAGGTTACATATTTAAAGTGGCCACAACTCTGG
CAAATAAGACCGTGTTAATATTTGGTTATTACTATAACGTTCTCTCAAAC
ATTAATATAATTTTCCCTTGCATAAAGAATTTTGTAAGGACACTAAGCCT
TAACCATTTCCAGCCATTAGAGCTTGATCTTTGACATGAAGCACTTTGTT
TCAGTTCATTTTCTTTAAATTCCTACCATGCAAGATGTATTCTATGTCTA
CTGACCAACCCCCCTCCTCGTAGGCAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_n16.g1 MSMg01no492_n16.g1 CHROMAT_FILE:
MSMg01no492_n16.g1 PHD_FILE: MSMg01no492_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:11 2005
         (296 letters)



>mm_chr12_40030441_40031136
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaaatgttgagttgtaaagggttttgaaagtatatggtaatttaaatctgggctactg 60
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 496 gggaaatgttgagttgtaaagggttttgaaagtagagggtaatttaaatctgggctactg 437

                                                                       
Query: 61  ccttcctaagtccataagtctggttttatgctcatttctgacaaaatatagaaataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccttcctaagtccataagtctggttttatgctcatttctgacaaaatatagaaataaaat 377

                                                                       
Query: 121 cacccacatggcaagattataatgctcaaataaggttacatatttaaagtggccacaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cacccacatggcaagattataatgctcaaataaggttacatatttaaagtggccacaact 317

                                                                       
Query: 181 ctggcaaataagaccgtgttaatatttggttattactataacgttctctcaaacattaat 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 316 ctggcaaataagaccgtgttaatatttagttattactataacgttctctcaaacattaat 257

                                                                   
Query: 241 ataattttcccttgcataaagaattttgtaaggacactaagccttaaccatttcca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ataattttcccttgcataaagaattttgtaaggacactaagccttaaccatttcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)