BAC Information

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BAC

Clone NameMSMg01-492O21
Chromosome12 (Build37)
Map Location 85,426,305 - 85,426,813
singlet/doubletsinglet
Overlap genenone
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5
Downstream geneLOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492O21.T7 (MSMg01no492_o21.b1)MSMg01-492O21.TJ (MSMg01no492_o21.g1)
ACCAG570569AG570570
length720845
length of high quality
(start - end)		509 (67 - 575)---
definitionCHROMAT_FILE: MSMg01no492_o21.b1 PHD_FILE: MSMg01no492_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:17 2005CHROMAT_FILE: MSMg01no492_o21.g1 PHD_FILE: MSMg01no492_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGCAACCTCTCGGTGGCTCACAACCATTGTAATTGAATCCGACGCCC
TTTTGTGGTGTTTTTGAAGACAGTGAAGGTATAGTCGCATACATTAAATA
AATAAATAAATCTTTAAAAATATATCAGATTTTAACTTCTCCTCTTAGAA
TAGAAGTCATAACACTTTAGTTACAGACTATTTACTAGTTAGGAATAAGA
CTAATACAAAATTTAAAGCAAATATGCATCTAGTTTTATAATATCTTCTC
AAATGAGTAAGGATTCTTCTAGCAAAGCAATTGTATTGGGTTCTTGTTAA
TACTATAGACATGTAACTCCAGTATTTCAAAAGTTGGGAAAACATTTAGA
TTAGGATTATGTGATTTTTAACATTGATAATTGTGAAAATATATAAAAAT
AAGACCACCTGTTATAAATAGTCCAATAAACCTAAATGTTTCTTAAAACA
TTAACTGTATTTGCACCTTAATTTCATTATTCTTGTGTTCATTTATTATT
GTTGTGTTTTGATTCTTTTTTCTGTTTGTTTGTTTTTGTTTTTTGGCTTT
TTGAGACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGTAACTCACTCTG
TAGACCAGGCTAGCCTCATACTCAAGAATCCACCTGTCTCTGCCTTCCAA
GTTCTGGGATTAGTTCTGGC

GCCTGGCGGCCGCTGNCCTCCAATACTGTGAACTATAGACTGATCTCGGA
ATGCTCTGATGTCAGTAGGACTGTGTTTGGTTGGTTTGGGGACGGCTGAA
ATAANNNNTNNAATTTCTCCAAATTTCCAANAAAAAATTTGAAATTGTCT
GGGAGAAAAACCCCCCCAAAATATTNNAAAAGGAAAAAAAAAAAAAAAAA
AACCCCGGGGCCCCCAAAAACCAAATACAAAAAAAATCTTCCATTACACA
AAAATTTCCCCAAAAGAAAAAAAAAAAAAAATAACACCCCCNCCCCCCCC
TTTTAAAATCCCTCCTTGATTGAAAAACCCATAAACCCCCGAACCGCCCC
CCCTCTTTCACCTCAAAATCTCCAATTTTCTGGTTTTTTTACCCCCCCCC
CCGGAGGCNCCCTGGAAGAGGCGATTCTCCAAAATCATACTAACTCTATC
CTCATACATAAGAGACTCCTTGCATTAANACANACTCTAATTNCTCTCTC
TCTCAAAANTATTNNAATATTCTTCACAANCTCCNNCCACATATTTTTCC
TCCTACAATTTATTATATTTATTTTTTTNTAATTTTTTTTTTTTTNCATT
TTTTTTNAATCTACTNCTCCCCCGTTTCCCCTCCTCTTCCCCTCTTCNCN
NCCTCTCTCCCCTTCCCCCCCTTCTACCTTCTCTTCTCTCTCTTCTCCTC
CTTCCCNCTTCTTTCTTTTCCTTTTTTCCCCTCCTTCCTTTCCCCTCTTT
CCTCCTCTTTTTCCTTCCCTCCCCTTCCCCTTAACTCCCTTTTCTCTCCC
CCCCTCCTTTTTCCNTTTTTCTTTCCTGTTAGTCTCTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_o21.b1 MSMg01no492_o21.b1 CHROMAT_FILE:
MSMg01no492_o21.b1 PHD_FILE: MSMg01no492_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:17 2005
         (509 letters)



>mm_chr12_85426001_85426909
          Length = 909

 Score =  922 bits (477), Expect = 0.0
 Identities = 501/509 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctcacaaccattgtaattgaatccgacgcccttttgtggtgtttttgaagacagtga 60
           ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 813 tggctcacaaccattgtaattgaatccgatgtccttttctggtgtttttgaagacagtga 754

                                                                       
Query: 61  aggtatagtcgcatacattaaataaataaataaatctttaaaaatatatcagattttaac 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aggtatagttgcatacattaaataaataaataaatctttaaaaatatatcagattttaac 694

                                                                       
Query: 121 ttctcctcttagaatagaagtcataacactttagttacagactatttactagttaggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttctcctcttagaatagaagtcataacactttagttacagactatttactagttaggaat 634

                                                                       
Query: 181 aagactaatacaaaatttaaagcaaatatgcatctagttttataatatcttctcaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aagactaatacaaaatttaaagcaaatatgcatctagttttataatatcttctcaaatga 574

                                                                       
Query: 241 gtaaggattcttctagcaaagcaattgtattgggttcttgttaatactatagacatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtaaggattcttctagcaaagcaattgtattgggttcttgttaatactatagacatgtaa 514

                                                                       
Query: 301 ctccagtatttcaaaagttgggaaaacatttagattaggattatgtgatttttaacattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctccagtatttcaaaagttgggaaaacatttagattaggattatgtgatttttaacattg 454

                                                                       
Query: 361 ataattgtgaaaatatataaaaataagaccacctgttataaatagtccaataaacctaaa 420
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 453 ataattgtgaaaaaatataaaaataagaccacctgttataaataatccaataaacctaaa 394

                                                                       
Query: 421 tgtttcttaaaacattaactgtatttgcaccttaatttcattattcttgtgttcatttat 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 393 tgtttcttaaaacattaactgtatttgcaccttaattttattattcttgtgttcatttat 334

                                        
Query: 481 tattgttgtgttttgattcttttttctgt 509
           |||||||||||||||||| ||||||||||
Sbjct: 333 tattgttgtgttttgattattttttctgt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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