BAC Information

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BAC

Clone NameMSMg01-493A15
Chromosome12 (Build37)
Map Location 60,596,032 - 60,596,329
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneLOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493A15.T7 (MSMg01no493_a15.b1)MSMg01-493A15.TJ (MSMg01no493_a15.g1)
ACCAG570652AG570653
length839789
length of high quality
(start - end)		---302 (72 - 373)
definitionCHROMAT_FILE: MSMg01no493_a15.b1 PHD_FILE: MSMg01no493_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:26 2005CHROMAT_FILE: MSMg01no493_a15.g1 PHD_FILE: MSMg01no493_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACGAACCCCTAACGCTCCTCCATCCCCCACTTTTTTATCCACAAACAAG
GACAGCCAGCACGGACAGAGCCCAAGGAGCACGGGCCGCTCACGCTCTCT
ATACCGACGCGCCGTACGCCCGAGGGAGGACTGTCTGGTCCTTAGTGTCG
TGGCACCGGCCTTCAAAAAACATACCAAACCCCCACCATTCCTCCTTTCT
TGGAGGGGGCACAGAGTGGTTGTTATGTGACGTACTCAGCAGCATAAGTC
AGATAACTGGACCGCTAGCCTGCAGATTTTTTCTCGCCTCATAACCCACC
TCTTATTCCGTTTGCAACGAGTTGTAGAGTCCAGAGTTATATATACAGTA
ATATCTCCACAAAATATAACACTATTACCTGGACCACCAGATTAATGTTG
ATCACATCTCTTCCTCCCCTATCCCCCTTCCCTTTTTATATATTATTACA
CACCATATCCCACCTCCACTCTTCTGCATTCGTGTCACGCTAGCATCGAC
GGAATATGTACCCGACCAGACCCCCTCCATGTCTTATTCCTAAAGATTTA
TACCAACCCGAGATTCATCCTAACCTGCCTCATTAACGCCTTAACCGTAT
TGCCAGTTAGCCATCACCCACTTTTATATATCTTAGATCACAGGAGATTG
CGGTGAGAATACCCACAGATTAGCAATACACTACATATCCGCACTATTAC
CTTTTTTAACCTCACCCCGCACTTATTACCATTGAAATCTTCCTTTCACC
TACACCTATTTATTATATCAAACCCAACCGATCTATATTCAACCAGCCCC
GTTTAATTTTAAATTTTCCGCCCAGCGTATCTTTTTTTN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTGGAAGTGTCACTTATACCTGCTGGG
AGAGGAAAAATTAATTTTCTCTAGTATAGTGACACTGGATATATCAACCA
CTCCAGGACAGACTTCAGGTTCACGAGTAGTTGAGAAACATATCTGAACT
CTACCTTTGTGTACATGTGCTTTTATTTGGTTAGTTTCGTGTTTGGTTTG
GTTTGGTTTGGTTTGGTTTGCATGTGGTTTTATAACGTCTTGGTTTTGAA
GCTGTTTGGTTTTTTTTTTTTTCTTTTTTAGAAGGAACTCAAGGTTTAGT
AGGGAGGGAGGGGGAGGGGGANANNNNNNGGNNNNNNNNGNNNNNNNNNN
NNNNNGNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTGTGTTT
NTTTTGTTTTTGTTTGTTTTTTGTTTTTGTTTGGGGGGGGTGGTGGTTTG
TTGTTGATGGTTTTTTTGTTTGGTGTTTTTGTGTGGTTTTTTTTTGGTGT
GTTTTTTTTTTTTGTGTTTTATGTGTTTGTTTTTTTTTTTTTGTTTTTTT
TGTGGTGTTGTGGTGGGTTGGTTTTTGTATTTTTTGTGTTGTTTGTGTGG
TTTTTTTTTTGNGTGGGGTTGTGGTGGGTAAATATTTATATTTTTTTTTT
TTTTTTTATTATGAATATTTAATTGGGTTGTTGTTTTGTTTAATTATGAT
TAATGGATTTGTATGTGTGTAGTGGTGTTGAGTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_a15.g1 MSMg01no493_a15.g1 CHROMAT_FILE:
MSMg01no493_a15.g1 PHD_FILE: MSMg01no493_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:26 2005
         (302 letters)



>mm_chr12_60595633_60596332
          Length = 700

 Score =  553 bits (286), Expect = e-162
 Identities = 296/300 (98%), Gaps = 2/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtggaagtgtcacttatacctgctgggagaggaaaaattaattttctctagtatagtg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 697 ttgtggaagtgtcacttatacctgctgggagaggaaaaatcaattttctctagtatagtg 638

                                                                       
Query: 61  acactggatatatcaaccactccaggacagacttcaggttcacgagtagttgagaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acactggatatatcaaccactccaggacagacttcaggttcacgagtagttgagaaacat 578

                                                                       
Query: 121 atctgaactctacctttgtgtacatgtgcttttatttggttagtttcgtgtttggtttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atctgaactctacctttgtgtacatgtgcttttatttggttagtttcgtgtttggtttgg 518

                                                                       
Query: 181 tttggtttggtttggtttgcatgtggttttataacgtcttggttttgaagctgtttggtt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 517 tttggtttggtttggtttgcatgtggttttataatgtcttggttttgaagctgtttggtt 458

                                                                       
Query: 241 tttttttttttcttttttagaaggaactcaaggtttagtagggagggagggggaggggga 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttttttttt--cttttttagaaggaactcaaggtttagtagggagggagggggaggggga 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 700
Length adjustment: 9
Effective length of query: 293
Effective length of database: 691
Effective search space:   202463
Effective search space used:   202463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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