CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTTTTGTACCTGATTCCCTTGATATCGCCACTAAATCAGCTTTCT
ATTCCTCCAGTGATACCTCTATGCCTTTAATTCTCTTGAGGACTGACAAG
AGTGTCTTCCTCTCTCTCTGCCAGTGAATCTCAGATTTACTGAGTCACGT
TAGAAATCCTTCCTTCTGAAGTTAGCAAATCACACTGTCTGTGAGAATAA
GAATACATACTTAGTTTATTCTTTTTAATCATCAAGCCTACATATTAGAG
CAGGCAGATTTTCAGCATTCAGTTAATTGAAAAAGATATACTTTAATTAA
TAAACTCTAACTTAGAGCACACCAGCCTTTGAGTTTTAAGTATGATCGCT
AACAAACCACAGAGCAGAGCAGGGTAGAGAACCAGGGTGCTTCCTATTTG
TTAAATGCAAGGAGATAACCACCCATGATGCAAAATTCCCCTTCCTATTT
AATAGCACATATTAAAAAACACAACAATACTGATTCAATTACTTAAGTAG
GTCCAGTGGAATTGAGAGGTTCTGTGTCTTTATTATCTCGAATCTAACAG
GCAAATATTGATAATCCCATCTTCAAGCATGAGGTAAAATAAAAACTTTT
AGTTTATGGGTTCCCTTACAAGATTTCCTAATATCATAAGTGTTTACTTG
ATATCCAGAATTTTCTTGCCTTTATCTCCCAAGTGC

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCANGGAATTCAATAAGTAAATGCATAGCTTTAGAAC
ATAAGTAGGCAAACATACCCAAAAATTGGTGGCTCCTGTCTGAAATAAAA
TAAATAAATAAATAAATAAATAAATAAATACATAAATAAATAAATAGAAC
AAGAAAAAGAATCAACAAAATATAGTCAGTTCTTTGAGAAAGTTAATGCA
ATAAACAAAACTTTAGCCAAACTAACTAAAAGGCAGAAAGAGGTTTATAT
TCAAATAAACTAAATCAAAAATGAAAAGTGGGATATGTCAACAGAAACTG
AGAAGATCCAAAACCTGTACTTCANAAAACCNTTGGGTGGNCCTTTTTTT
CCCAACCCAAAAAAAAAAAATATTTTTTTNTATAAAANACAAAAAAAATA
AAAAAAATATTATTTTCTCCTTCCCTTTATTCTTTTATTTCCCCACCCCC
CCCTCCATTATTTTTTTTTTTATCATCCTCTTTTATATTCTATTTCTTTT
TTTTTTATTCACATCCTACTTCCATTTTCTTTTTATTTTTCTCCCCTCTT
TTCTATTTTTTTTCACACCCTTCATCTTTTTCTTTTTTTTCCTATCACAT
TTACCTCTACCTTTCTCTTTATCTATCCCCCCTCATTTTTATTTTCTCCT
TTTCCTCTCTTTTTTTCTCTCTCCCAATCATTTGTCATAATAATCTTTTG
TCCCTTTGCCCCCTAGCTTTTTN

Query= MSMg01no493_i05.b1 MSMg01no493_i05.b1 CHROMAT_FILE:
MSMg01no493_i05.b1 PHD_FILE: MSMg01no493_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:05 2005
         (565 letters)



>mm_chr12_50589842_50590804
          Length = 963

 Score = 1015 bits (525), Expect = 0.0
 Identities = 555/565 (98%), Gaps = 2/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccttgatatcgccactaaatcagctttctattcctccagtgatacctctatgccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccttgatatcgccactaaatcagctttctattcctccagtgatacctctatgccttt 260

                                                                       
Query: 61  aattctcttgaggactgacaagagtgtcttcctctctctctgccagtgaatctcagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattctcttgaggactgacaagagtgtcttcctctctctctgccagtgaatctcagattt 320

                                                                       
Query: 121 actgagtcacgttagaaatccttccttctgaagttagcaaatcacactgtctgtgagaat 180
           |||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 321 actgagtcacattataaatccttccttctgaagttagcaagtcacact-tctgtgagaat 379

                                                                       
Query: 181 aagaatacatacttagtttattctttttaatcatcaagcctacatattagagcaggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagaatacatacttagtttattctttttaatcatcaagcctacatattagagcaggcaga 439

                                                                       
Query: 241 ttttcagcattcagttaattgaaaaagatatactttaattaataaactctaacttagagc 300
           ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 440 ttttcagcattcaattaattgaaaaa-atataatttaattaataaactctaacttagagc 498

                                                                       
Query: 301 acaccagcctttgagttttaagtatgatcgctaacaaaccacagagcagagcagggtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acaccagcctttgagttttaagtatgatcgctaacaaaccacagagcagagcagggtaga 558

                                                                       
Query: 361 gaaccagggtgcttcctatttgttaaatgcaaggagataaccacccatgatgcaaaattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaaccagggtgcttcctatttgttaaatgcaaggagataaccacccatgatgcaaaattc 618

                                                                       
Query: 421 cccttcctatttaatagcacatattaaaaaacacaacaatactgattcaattacttaagt 480
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 619 cccttcctatttaatagcacatattaaaaaatgcaacaatactgattcaattacttaagt 678

                                                                       
Query: 481 aggtccagtggaattgagaggttctgtgtctttattatctcgaatctaacaggcaaatat 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 679 aggtccagtggaattgagaggttctgtgtctttattatcttgaatctaacaggcaaatat 738

                                    
Query: 541 tgataatcccatcttcaagcatgag 565
           |||||||||||||||||||||||||
Sbjct: 739 tgataatcccatcttcaagcatgag 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space:   528915
Effective search space used:   528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)