BAC Information

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BAC

Clone NameMSMg01-495H02
Chromosome12 (Build37)
Map Location 96,314,018 - 96,314,427
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495H02.T7 (MSMg01no495_h02.b1)MSMg01-495H02.TJ (MSMg01no495_h02.g1)
ACCAG572486AG572487
length749843
length of high quality
(start - end)
409 (74 - 482)---
definitionCHROMAT_FILE: MSMg01no495_h02.b1 PHD_FILE: MSMg01no495_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:31 2005CHROMAT_FILE: MSMg01no495_h02.g1 PHD_FILE: MSMg01no495_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTGATCTTTTTATGAATTACCAAATGTTTTTTTTTTT
TTTCATCAGATATGTAGCTAGAGTTTCTGCATTTCTGGGACCGAGGAAGT
AATACTAATAGTGTTGCCTGAAGAATCAGGATACATCTATAAATTGGAAA
ACGTTGATTGTGAAAAATAAAAAAAATATGGCAATATATTAGGTGTAGCT
CTTATCAGACACACTAATTATACATCTGTGTTCCACATGAACACAAATAC
ACATTCCAGTGACTTAGTAGTTGAATTTAAATGTTGTGGATTATACTTAA
ATTTATTCTTGTAATAATGTTGCCTTCATTAAAATATAAAGTAGGAACAT
AAAATAGTAGGCTATACACAACTTTATCCTCAAGAAAGAATACATTAGTG
CAAGTGTGTTTGTGTATGAGTGTGTGCATTCGCGCGCATCCGTTGATTTT
TAAATTTCCTGTGGCTGGTCCCAAATGAACCACCAATAACAGGAATAATC
CTTTTGGGAGCCTTACCCGGCGCCGTGCCTTTACCATGGGTTGGGCCTAT
TTTCCCCATTTCACAGGCTCCCCCCAGAATTCGCTTGGGAACCCCGACCT
CTTTTGGTTTGGCCAAAATTGAAAAGGTTTTTTTCTCCATAAAAAAATTT
TTTCTTCTTTTTCCCGCCTTTATTTCCCCAAATTTTTCTCAAGGGTGAA
CCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACCCCCCCAATTCTGGACCAGGAAGTGGGAGTGGGTATG
TTGGCAAGCAGGCTTGGTGGAGGGTATAGGGATCTTCTGCCATCCCCTTT
CTCACTGCCCTGCCGACCATCCCCCCTCCCCCCCACACCCCCCTCCCTAC
CATCCCCCATACCTTTCCCTCTCCCACCTCTCTCTCTCCCCGCCACATTT
CTCTCACTTCTCCTCCATCACTCCTTACCCTCTGCTTCCCCCCCCCATCC
CCCCCCCCCCCCCTTTTCTTTTTATCTCCCCCCTCCCCTTCCCCCTCCTC
CTCATCTCTTTCTCCCCCCCCCTCCCTCCTTCCCCTCCCCCCCCCCCCCC
CCTCTCCGTCCTCCCCCCCCCCCCCCCTCTTCCACCCCACACCCCTTCCT
CCTCCCCCCTCTCCTCCCCCCTCCCCCCCCCCCCCCCCACCCCCCCTCCC
CCCATCCCTCCCCCCCCCCCCCCTTCCTCTCCTCCCTCCCCTCCCTCCCC
CTCCCCTCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCCCTCCCCCTTC
CTCCCCTCTCCCCCCCCCCCCCTTCTCCCCCCCCTCTCTCTCTCCCCCCC
CCCCCCCTCCCTCCTCCCCCCCGTAACCACCCCCACATCACCCCTTCCTC
CCCCCTCTCCCCTCCTTTTTCCCCTCTCCCTTCTTTACCTTCCCCCCTCC
ATTCCTTCCTCCTCCCCCCCCCACCTCCTTCCCCCCCTACTCTCTCCCCC
CCTCCTCTCTTATATCCCTCCTCCCCCACCCCCTCCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_h02.b1 MSMg01no495_h02.b1 CHROMAT_FILE:
MSMg01no495_h02.b1 PHD_FILE: MSMg01no495_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:31 2005
         (409 letters)



>mm_chr12_96313818_96314627
          Length = 810

 Score =  762 bits (394), Expect = 0.0
 Identities = 406/410 (99%), Gaps = 1/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaattaccaaatgtttttttttttttt-catcagatatgtagctagagtttctgcat 59
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tatgaattaccaaatgtttttttttttttttcatcagatatgtagctagagtttctgcat 260

                                                                       
Query: 60  ttctgggaccgaggaagtaatactaatagtgttgcctgaagaatcaggatacatctataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgggaccgaggaagtaatactaatagtgttgcctgaagaatcaggatacatctataa 320

                                                                       
Query: 120 attggaaaacgttgattgtgaaaaataaaaaaaatatggcaatatattaggtgtagctct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggaaaacgttgattgtgaaaaataaaaaaaatatggcaatatattaggtgtagctct 380

                                                                       
Query: 180 tatcagacacactaattatacatctgtgttccacatgaacacaaatacacattccagtga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcagacacactaattatacatctgtgttccacatgaacacaaatacacattccagtga 440

                                                                       
Query: 240 cttagtagttgaatttaaatgttgtggattatacttaaatttattcttgtaataatgttg 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagtagttgaacttaaatgttgtggattatacttaaatttattcttgtaataatgttg 500

                                                                       
Query: 300 ccttcattaaaatataaagtaggaacataaaatagtaggctatacacaactttatcctca 359
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 501 ccttcattaaaatataaagtaggaacacaaaatagtaggctatacacaaccttatcctca 560

                                                             
Query: 360 agaaagaatacattagtgcaagtgtgtttgtgtatgagtgtgtgcattcg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaagaatacattagtgcaagtgtgtttgtgtatgagtgtgtgcattcg 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space:   320400
Effective search space used:   320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)